UHGV-0145022

Genome information

vOTU vOTU-061942

Genome length 39,951 bps

CDS count 65

Completeness 96.21% (high-quality)

geNomad score 0.9696

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145022
vOTU ID	vOTU-061942
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_417954
BioSample	SAMN05578585
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9696
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.29
Jumbo phage	No

Genome content
Genome length	39,951 bps
GC content	39.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.52%
Average CDS length	561.74 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145022_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0145022_1	PHROG	phrog_489	endolysin	lysis
UHGV-0145022_1	UniRef90	UniRef90_S2Z487	MurNAc-LAA domain-containing protein	NA
UHGV-0145022_1	eggNOG-mapper	97139.C824_00247	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0145022_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0145022_1	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0145022_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0145022_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0145022_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0145022_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0145022_2	UniRef90	UniRef90_A0A4R3JPK4	DNA invertase Pin-like site-specific DNA recombinase	NA
UHGV-0145022_2	eggNOG-mapper	97139.C824_00068	Recombinase	NA
UHGV-0145022_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0145022_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0145022_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0145022_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0145022_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0145022_3	UniRef90	UniRef90_A0A1Z7M535	PINc domain-containing protein	NA
UHGV-0145022_3	eggNOG-mapper	1537915.JU57_12770	Large family of predicted nucleotide-binding domains	NA
UHGV-0145022_3	Pfam	PF01850	PIN domain	PIN
UHGV-0145022_3	COG	COG1487	Ribonuclease/mRNA interferase VapC, contains PIN domain	NA
UHGV-0145022_3	Structural annotation	PF01850, MF_00265, NF010285, COG1848	NA	NA
UHGV-0145022_4	UniRef90	UniRef90_R6H1A0	NA	NA
UHGV-0145022_4	eggNOG-mapper	1235799.C818_01523	NA	NA
UHGV-0145022_4	Pfam	PF14213	NA	DUF4325
UHGV-0145022_4	Structural annotation	PF14213	NA	NA
UHGV-0145022_5	PHROG	phrog_3364	NA	unknown function
UHGV-0145022_5	UniRef90	UniRef90_R6GFP2	ATP-binding region ATPase-like protein	NA
UHGV-0145022_5	eggNOG-mapper	907348.TresaDRAFT_0109	Histidine kinase	NA
UHGV-0145022_5	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0145022_5	Structural annotation	PF02518, PF01740, MF_00637, TIGR01925, TIGR00377, COG2172, COG1366	NA	NA
UHGV-0145022_6	PHROG	phrog_87	metallo-protease	other
UHGV-0145022_6	UniRef90	UniRef90_A0A3A6C6B5	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0145022_6	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0145022_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0145022_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0145022_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0145022_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0145022_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145022_7	UniRef90	UniRef90_A0A2N5Q2U4	Transcriptional regulator	NA
UHGV-0145022_7	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0145022_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145022_7	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0145022_7	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0145022_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145022_8	UniRef90	UniRef90_A0A2N5Q2U3	Transcriptional regulator	NA
UHGV-0145022_8	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0145022_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145022_8	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0145022_10	PHROG	phrog_585	NA	unknown function
UHGV-0145022_10	UniRef90	UniRef90_A0A413HZV5	NA	NA
UHGV-0145022_10	eggNOG-mapper	693746.OBV_25460	NA	NA
UHGV-0145022_10	Pfam	PF10711	NA	DUF2513
UHGV-0145022_10	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-0145022_11	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0145022_11	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-0145022_11	Pfam	PF11195	NA	DUF2829
UHGV-0145022_16	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0145022_16	PHROG	phrog_24603	NA	unknown function
UHGV-0145022_16	UniRef90	UniRef90_A0A4V2UQ37	Sporulation initiation factor Spo0A-like protein	NA
UHGV-0145022_16	eggNOG-mapper	658088.HMPREF0987_02126	response regulator	NA
UHGV-0145022_16	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0145022_16	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0145022_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145022_17	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0145022_17	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0145022_17	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0145022_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0145022_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0145022_18	UniRef90	UniRef90_A0A4R3JPH8	RNase H superfamily protein	NA
UHGV-0145022_18	Pfam	PF00075	RNase H	RNase_H
UHGV-0145022_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0145022_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0145022_20	PHROG	phrog_17690	NA	unknown function
UHGV-0145022_20	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0145022_21	PHROG	phrog_7566	NA	unknown function
UHGV-0145022_21	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0145022_26	eggNOG-mapper	1235792.C808_05356	NA	NA
UHGV-0145022_27	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145022_27	UniRef90	UniRef90_A0A374AE24	NA	NA
UHGV-0145022_27	eggNOG-mapper	1235802.C823_04659	NA	NA
UHGV-0145022_28	PHROG	phrog_10714	NA	unknown function
UHGV-0145022_29	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0145022_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0145022_29	UniRef90	UniRef90_A0A3E3DZW7	Restriction alleviation protein, Lar family	NA
UHGV-0145022_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0145022_29	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0145022_29	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0145022_29	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0145022_32	UniRef90	UniRef90_A0A2N5PB17	NA	NA
UHGV-0145022_34	PHROG	phrog_6568	NA	unknown function
UHGV-0145022_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0145022_35	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0145022_35	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0145022_35	Structural annotation	MF_00307	NA	NA
UHGV-0145022_37	UniRef90	UniRef90_A0A2N5Q1T5	Chemotaxis protein	NA
UHGV-0145022_37	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0145022_37	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0145022_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0145022_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145022_38	UniRef90	UniRef90_A0A4R3JPH6	HNH endonuclease	NA
UHGV-0145022_38	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0145022_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0145022_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0145022_39	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0145022_39	UniRef90	UniRef90_A0A2N5Q1Z2	RNA polymerase subunit sigma-70	NA
UHGV-0145022_39	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0145022_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0145022_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0145022_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0145022_40	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0145022_40	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0145022_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0145022_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0145022_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0145022_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0145022_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0145022_41	UniRef90	UniRef90_A0A4V2UQ51	HK97 family phage portal protein	NA
UHGV-0145022_41	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0145022_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0145022_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0145022_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0145022_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0145022_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0145022_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0145022_42	UniRef90	UniRef90_A0A4R3J973	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0145022_42	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0145022_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0145022_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0145022_42	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0145022_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0145022_43	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-0145022_43	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0145022_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0145022_43	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0145022_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0145022_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0145022_43	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0145022_44	PHROG	phrog_749	NA	unknown function
UHGV-0145022_44	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0145022_45	PHROG	phrog_19734	NA	unknown function
UHGV-0145022_45	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0145022_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0145022_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0145022_46	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-0145022_46	eggNOG-mapper	1111121.HMPREF1247_1235	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0145022_46	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0145022_46	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0145022_47	PHROG	phrog_78	tail terminator	connector
UHGV-0145022_47	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0145022_47	Structural annotation	PF20765	NA	NA
UHGV-0145022_48	PHROG	phrog_88	major tail protein	tail
UHGV-0145022_48	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0145022_48	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0145022_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0145022_48	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-0145022_49	PHROG	phrog_709	NA	unknown function
UHGV-0145022_49	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0145022_49	Structural annotation	PF11836	NA	NA
UHGV-0145022_50	PHROG	phrog_3033	NA	unknown function
UHGV-0145022_50	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0145022_50	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0145022_51	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0145022_51	UniRef90	UniRef90_A0A4R3J7W5	TP901 family phage tail tape measure protein	NA
UHGV-0145022_51	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0145022_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0145022_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0145022_51	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0145022_51	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0145022_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0145022_52	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0145022_52	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0145022_52	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0145022_52	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0145022_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0145022_52	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0145022_53	PHROG	phrog_13289	tail protein	tail
UHGV-0145022_53	UniRef90	UniRef90_A0A4R3J966	Phage minor structural protein	NA
UHGV-0145022_53	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0145022_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0145022_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0145022_53	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0145022_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0145022_54	PHROG	phrog_14030	NA	unknown function
UHGV-0145022_54	UniRef90	UniRef90_A0A4R3JAE4	Phage_lysozyme2 domain-containing protein	NA
UHGV-0145022_54	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0145022_54	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0145022_54	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0145022_54	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0145022_55	UniRef90	UniRef90_UPI000D7A7A43	collagen-like protein	NA
UHGV-0145022_55	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0145022_55	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0145022_56	PHROG	phrog_16164	NA	unknown function
UHGV-0145022_56	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0145022_56	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0145022_57	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0145022_57	Structural annotation	PF09136	NA	NA
UHGV-0145022_58	UniRef90	UniRef90_A0A1I0BM57	Subtilase family protein	NA
UHGV-0145022_59	PHROG	phrog_24103	NA	unknown function
UHGV-0145022_59	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0145022_60	eggNOG-mapper	411461.DORFOR_00732	NA	NA
UHGV-0145022_63	PHROG	phrog_199	holin	lysis
UHGV-0145022_63	UniRef90	UniRef90_S2YKE1	Toxin secretion/phage lysis holin	NA
UHGV-0145022_63	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0145022_63	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0145022_63	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0145022_63	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0145022_64	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0145022_64	PHROG	phrog_2577	transposase	integration and excision
UHGV-0145022_64	UniRef90	UniRef90_V8C4U4	Y1_Tnp domain-containing protein	NA
UHGV-0145022_64	eggNOG-mapper	471875.RUMLAC_02064	PFAM transposase IS200-family protein	NA
UHGV-0145022_64	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0145022_64	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0145022_64	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0145022_64	Structural annotation	PF01797, MF_00360, NF033573, COG1943	NA	NA
UHGV-0145022_65	KOfam	K07496	K07496; putative transposase	NA
UHGV-0145022_65	PHROG	phrog_506	transposase	integration and excision
UHGV-0145022_65	UniRef90	UniRef90_A0A373IEI8	Transposase	NA
UHGV-0145022_65	eggNOG-mapper	658088.HMPREF0987_00322	Putative transposase DNA-binding domain	NA
UHGV-0145022_65	PADLOC	Cas14u	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0145022_65	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0145022_65	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0145022_65	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0145022_65	NCBIFam	NF038281.1	IS200/IS605 family element RNA-guided endonuclease TnpB	NA
UHGV-0145022_65	COG	COG0675	Transposase	NA
UHGV-0145022_65	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA