UHGV-0145066

Genome information

Genome length 33,152 bps

CDS count 61

Completeness 98.36% (high-quality)

geNomad score 0.9617

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145066
vOTU ID	vOTU-066656
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_435991
BioSample	SAMN06016417
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9617
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.87
Jumbo phage	No

Genome content
Genome length	33,152 bps
GC content	27.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.01%
Average CDS length	485.51 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145066_4	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0145066_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0145066_5	PHROG	phrog_9611	endolysin	lysis
UHGV-0145066_5	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-0145066_5	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0145066_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0145066_5	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0145066_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0145066_5	Structural annotation	PF01510, PF18342, PF08239, NF040678, NF008758, COG5632	NA	NA
UHGV-0145066_6	PHROG	phrog_13256	NA	unknown function
UHGV-0145066_6	eggNOG-mapper	883114.HMPREF9709_01177	NA	NA
UHGV-0145066_8	PHROG	phrog_9116	tail protein	tail
UHGV-0145066_8	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-0145066_8	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-0145066_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0145066_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0145066_8	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0145066_11	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0145066_12	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0145066_12	eggNOG-mapper	1235790.C805_01801	Phage tail tape measure protein, TP901 family	NA
UHGV-0145066_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0145066_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0145066_13	UniRef90	UniRef90_R5YSS7	Phage-related protein	NA
UHGV-0145066_13	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0145066_13	COG	COG1511	NA	NA
UHGV-0145066_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0145066_14	UniRef90	UniRef90_UPI001C0BFF51	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0145066_14	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0145066_15	PHROG	phrog_706	NA	unknown function
UHGV-0145066_15	UniRef90	UniRef90_UPI000DD015CA	bacteriophage Gp15 family protein	NA
UHGV-0145066_15	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0145066_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0145066_15	Structural annotation	PF06854	NA	NA
UHGV-0145066_16	PHROG	phrog_4450	NA	unknown function
UHGV-0145066_16	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0145066_16	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0145066_16	Pfam	PF20378	NA	DUF6673
UHGV-0145066_16	Structural annotation	PF20378	NA	NA
UHGV-0145066_17	PHROG	phrog_3099	NA	unknown function
UHGV-0145066_17	eggNOG-mapper	658655.HMPREF0988_02555	NA	NA
UHGV-0145066_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0145066_18	PHROG	phrog_3266	tail completion	connector
UHGV-0145066_18	UniRef90	UniRef90_UPI001459F036	chloramphenicol resistance protein	NA
UHGV-0145066_18	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0145066_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0145066_19	UniRef90	UniRef90_UPI0011781EF8	minor capsid protein	NA
UHGV-0145066_19	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-0145066_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0145066_19	Structural annotation	PF11114	NA	NA
UHGV-0145066_20	PHROG	phrog_3366	NA	unknown function
UHGV-0145066_20	Pfam	PF20536	NA	DUF6751
UHGV-0145066_20	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0145066_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0145066_22	PHROG	phrog_283	major head protein	head and packaging
UHGV-0145066_22	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0145066_22	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0145066_22	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0145066_22	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0145066_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0145066_23	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-0145066_23	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0145066_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0145066_23	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0145066_25	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0145066_25	PHROG	phrog_3895	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0145066_25	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0145066_25	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0145066_25	COG	COG2369	NA	NA
UHGV-0145066_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0145066_26	UniRef90	UniRef90_A0A349GQA4	Phage capsid protein (Fragment)	NA
UHGV-0145066_26	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0145066_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0145066_26	COG	COG2369	NA	NA
UHGV-0145066_26	Structural annotation	PF06152	NA	NA
UHGV-0145066_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0145066_27	UniRef90	UniRef90_UPI001D0FF9EC	phage portal protein	NA
UHGV-0145066_27	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0145066_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0145066_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145066_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0145066_28	UniRef90	UniRef90_UPI0019D16F13	PBSX family phage terminase large subunit	NA
UHGV-0145066_28	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0145066_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0145066_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0145066_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145066_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0145066_29	eggNOG-mapper	632518.Calow_0826	NA	NA
UHGV-0145066_34	eggNOG-mapper	1408422.JHYF01000026_gene3518	NA	NA
UHGV-0145066_45	PHROG	phrog_8684	NA	unknown function
UHGV-0145066_45	UniRef90	UniRef90_A0A1C5NXA4	YopX protein	NA
UHGV-0145066_45	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0145066_45	Pfam	PF09643	YopX protein	YopX
UHGV-0145066_45	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0145066_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0145066_47	KOfam	K01159	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	NA
UHGV-0145066_47	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0145066_47	UniRef90	UniRef90_A0A7X8D1J2	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0145066_47	eggNOG-mapper	871968.DESME_08990	NA	NA
UHGV-0145066_47	Pfam	PF02075	Crossover junction endodeoxyribonuclease RuvC	RuvC
UHGV-0145066_47	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-0145066_48	PHROG	phrog_7566	NA	unknown function
UHGV-0145066_48	UniRef90	UniRef90_A0A1I0JPK6	Phosphoenolpyruvate carboxykinase	NA
UHGV-0145066_48	eggNOG-mapper	1118057.CAGX01000020_gene1648	NA	NA
UHGV-0145066_50	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0145066_50	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0145066_50	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0145066_50	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0145066_51	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145066_51	eggNOG-mapper	1462526.BN990_01808	NA	NA
UHGV-0145066_51	Structural annotation	PF12684, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0145066_52	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0145066_52	UniRef90	UniRef90_A0A858BRQ4	NA	NA
UHGV-0145066_52	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0145066_52	Pfam	PF06378	NA	DUF1071
UHGV-0145066_52	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0145066_54	PHROG	phrog_9804	NA	unknown function
UHGV-0145066_54	UniRef90	UniRef90_A0A1V4SSD0	Loader and inhibitor of phage G40P	NA
UHGV-0145066_54	eggNOG-mapper	1291050.JAGE01000002_gene3261	Loader and inhibitor of phage G40P	NA
UHGV-0145066_54	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0145066_54	Structural annotation	PF11417	NA	NA
UHGV-0145066_55	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145066_55	UniRef90	UniRef90_A0A523QSG4	Phg_2220_C domain-containing protein	NA
UHGV-0145066_55	eggNOG-mapper	1151292.QEW_0390	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0145066_55	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0145066_55	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0145066_55	Structural annotation	PF09524, PF01475, TIGR02220, NF041413, COG0735	NA	NA
UHGV-0145066_57	PHROG	phrog_1123	NA	unknown function
UHGV-0145066_60	UniRef90	UniRef90_A0A7Z8G4B3	HTH cro/C1-type domain-containing protein	NA
UHGV-0145066_60	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0145066_60	Pfam	PF05339	NA	DUF739
UHGV-0145066_60	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0145066_60	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0145066_61	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0145066_61	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0145066_61	UniRef90	UniRef90_UPI000690DD4A	LexA family transcriptional regulator	NA
UHGV-0145066_61	eggNOG-mapper	1123230.ARQJ01000006_gene2611	Peptidase S24-like	NA
UHGV-0145066_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145066_61	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0145066_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0145066_61	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA