UHGV-0145076

Genome information

Genome length 44,987 bps

CDS count 62

Completeness 96.61% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145076
vOTU ID	vOTU-059981
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400360
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.74
Jumbo phage	No

Genome content
Genome length	44,987 bps
GC content	45.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.74%
Average CDS length	668.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145076_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0145076_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145076_2	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0145076_2	eggNOG-mapper	1151292.QEW_0725	DNA-binding helix-turn-helix protein	NA
UHGV-0145076_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145076_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145076_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0145076_4	PHROG	phrog_6058	NA	unknown function
UHGV-0145076_4	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0145076_4	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0145076_4	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0145076_5	Structural annotation	NF041909	NA	NA
UHGV-0145076_6	PHROG	phrog_14367	NA	unknown function
UHGV-0145076_6	UniRef90	UniRef90_R6WTN1	Peptidoglycan-binding LysM	NA
UHGV-0145076_6	Pfam	PF01476	LysM domain	LysM
UHGV-0145076_6	COG	COG1388	LysM repeat	NA
UHGV-0145076_6	Structural annotation	MF_02014, NF010723, COG1388	NA	NA
UHGV-0145076_7	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145076_7	UniRef90	UniRef90_R6WGP6	Putative phage-type endonuclease	NA
UHGV-0145076_7	eggNOG-mapper	706434.HMPREF9429_00551	YqaJ viral recombinase family protein	NA
UHGV-0145076_7	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0145076_7	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0145076_7	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0145076_7	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0145076_8	UniRef90	UniRef90_R6WLK2	Conserved domain protein	NA
UHGV-0145076_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145076_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0145076_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0145076_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0145076_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0145076_9	UniRef90	UniRef90_R6XVK6	Putative phage RecT family protein	NA
UHGV-0145076_9	eggNOG-mapper	218284.CCDN010000001_gene901	RecT family	NA
UHGV-0145076_9	Pfam	PF03837	RecT family	RecT
UHGV-0145076_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0145076_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0145076_9	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0145076_11	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0145076_11	UniRef90	UniRef90_R6WTP4	N-terminal phage replisome organizer	NA
UHGV-0145076_11	eggNOG-mapper	1211817.CCAT010000007_gene1058	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0145076_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0145076_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0145076_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0145076_11	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0145076_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0145076_14	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0145076_14	UniRef90	UniRef90_R6WTQ1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0145076_14	eggNOG-mapper	1235799.C818_00443	C-5 cytosine-specific DNA methylase	NA
UHGV-0145076_14	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0145076_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0145076_14	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0145076_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0145076_14	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0145076_16	Structural annotation	PF21098	NA	NA
UHGV-0145076_17	PHROG	phrog_10714	NA	unknown function
UHGV-0145076_17	Structural annotation	PF21173	NA	NA
UHGV-0145076_18	PHROG	phrog_3878	NA	unknown function
UHGV-0145076_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0145076_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0145076_25	UniRef90	UniRef90_A0A316S9J1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0145076_25	eggNOG-mapper	743719.PaelaDRAFT_5642	Endodeoxyribonuclease RusA	NA
UHGV-0145076_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0145076_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0145076_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0145076_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0145076_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145076_26	UniRef90	UniRef90_R6WGR4	Single-stranded DNA-binding protein	NA
UHGV-0145076_26	eggNOG-mapper	546268.NEISUBOT_05135	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0145076_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0145076_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0145076_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0145076_26	Structural annotation	PF00436, MF_00984, TIGR00621, COG0629	NA	NA
UHGV-0145076_31	Structural annotation	PF13983	NA	NA
UHGV-0145076_32	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0145076_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145076_34	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0145076_34	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0145076_34	eggNOG-mapper	568816.Acin_1836	Terminase RNaseH-like domain	NA
UHGV-0145076_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0145076_34	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0145076_36	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0145076_36	UniRef90	UniRef90_UPI001F3F9DD9	portal protein	NA
UHGV-0145076_36	eggNOG-mapper	568816.Acin_1834	Bacteriophage head to tail connecting protein	NA
UHGV-0145076_36	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0145076_36	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0145076_37	PHROG	phrog_528	NA	unknown function
UHGV-0145076_37	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0145076_38	PHROG	phrog_458	protease	other
UHGV-0145076_38	eggNOG-mapper	568816.Acin_1832	NA	NA
UHGV-0145076_39	PHROG	phrog_212	major head protein	head and packaging
UHGV-0145076_39	UniRef90	UniRef90_A0A6J5KPX9	Major capsid protein	NA
UHGV-0145076_39	eggNOG-mapper	568816.Acin_1831	NA	NA
UHGV-0145076_39	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0145076_39	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0145076_40	PHROG	phrog_427	NA	unknown function
UHGV-0145076_40	Structural annotation	PF21190	NA	NA
UHGV-0145076_41	PHROG	phrog_394	tail protein	tail
UHGV-0145076_41	UniRef90	UniRef90_A0A0U1KW64	NA	NA
UHGV-0145076_41	eggNOG-mapper	1123288.SOV_1c10710	NA	NA
UHGV-0145076_41	Structural annotation	PF17212	NA	NA
UHGV-0145076_42	PHROG	phrog_376	tail protein	tail
UHGV-0145076_42	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0145076_42	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0145076_42	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0145076_43	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0145076_43	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0145076_44	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0145076_44	eggNOG-mapper	568816.Acin_1826	NA	NA
UHGV-0145076_44	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0145076_45	UniRef90	UniRef90_A0A1Q6RQM5	SLT domain-containing protein	NA
UHGV-0145076_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0145076_45	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0145076_46	PHROG	phrog_9880	NA	unknown function
UHGV-0145076_46	UniRef90	UniRef90_A0A1Q6RQR6	LPD3 domain-containing protein	NA
UHGV-0145076_46	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0145076_46	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0145076_47	PHROG	phrog_1640	tail protein	tail
UHGV-0145076_47	eggNOG-mapper	1115515.EV102420_06_00490	NA	NA
UHGV-0145076_47	Structural annotation	PF03906	NA	NA
UHGV-0145076_48	Structural annotation	PF08948	NA	NA
UHGV-0145076_49	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0145076_49	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0145076_49	eggNOG-mapper	520709.F985_01945	NA	NA
UHGV-0145076_49	Pfam	PF14301	NA	DUF4376
UHGV-0145076_49	Structural annotation	PF14301, COG1382	NA	NA
UHGV-0145076_50	PHROG	phrog_4105	NA	unknown function
UHGV-0145076_50	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0145076_52	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-0145076_52	Structural annotation	PF21277	NA	NA
UHGV-0145076_53	PHROG	phrog_774	NA	unknown function
UHGV-0145076_53	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0145076_56	UniRef90	UniRef90_A0A316S6W0	HTH luxR-type domain-containing protein	NA
UHGV-0145076_56	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0145076_56	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0145076_56	Structural annotation	PF08281, MF_00674, NF001073, COG2739	NA	NA
UHGV-0145076_57	PHROG	phrog_21718	NA	unknown function
UHGV-0145076_58	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0145076_59	PHROG	phrog_16490	NA	unknown function
UHGV-0145076_59	eggNOG-mapper	445972.ANACOL_01880	NA	NA
UHGV-0145076_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0145076_61	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0145076_62	UniRef90	UniRef90_A0A2Z6ICF7	Permease	NA
UHGV-0145076_62	eggNOG-mapper	626939.HMPREF9443_00786	glutamate:sodium symporter activity	NA
UHGV-0145076_62	COG	COG0786	Na+/glutamate symporter	NA