UHGV-0145136

Genome information

Genome length 24,851 bps

CDS count 43

Completeness 56.00% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145136
vOTU ID	vOTU-023196
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_414839
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.83
Jumbo phage	No

Genome content
Genome length	24,851 bps
GC content	53.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.61%
Average CDS length	540.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145136_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0145136_1	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0145136_1	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0145136_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0145136_1	COG	COG2369	NA	NA
UHGV-0145136_1	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0145136_3	PHROG	phrog_8680	NA	unknown function
UHGV-0145136_3	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0145136_3	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0145136_3	Pfam	PF14386	NA	DUF4417
UHGV-0145136_3	Structural annotation	PF14386	NA	NA
UHGV-0145136_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0145136_5	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0145136_5	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0145136_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0145136_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0145136_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145136_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0145136_6	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0145136_6	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0145136_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0145136_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0145136_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0145136_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145136_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0145136_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0145136_7	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0145136_7	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0145136_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0145136_7	Structural annotation	PF16677	NA	NA
UHGV-0145136_8	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0145136_8	Structural annotation	TIGR01636	NA	NA
UHGV-0145136_12	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0145136_14	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0145136_14	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0145136_14	UniRef90	UniRef90_UPI00189C0965	Lar family restriction alleviation protein	NA
UHGV-0145136_14	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-0145136_14	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0145136_14	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0145136_14	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0145136_14	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-0145136_14	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0145136_18	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0145136_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0145136_18	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0145136_18	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0145136_18	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0145136_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0145136_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0145136_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0145136_18	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0145136_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0145136_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0145136_20	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0145136_20	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0145136_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0145136_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0145136_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0145136_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0145136_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0145136_21	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0145136_21	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0145136_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0145136_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0145136_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0145136_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0145136_22	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145136_22	UniRef90	UniRef90_UPI000F093508	phage replication protein	NA
UHGV-0145136_22	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0145136_22	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0145136_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0145136_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145136_23	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0145136_23	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0145136_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0145136_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0145136_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0145136_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0145136_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0145136_24	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0145136_24	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0145136_25	PHROG	phrog_7566	NA	unknown function
UHGV-0145136_25	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0145136_25	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0145136_26	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145136_26	UniRef90	UniRef90_UPI0004B3FA8C	AP2 domain-containing protein	NA
UHGV-0145136_26	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0145136_26	Structural annotation	PF17375	NA	NA
UHGV-0145136_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0145136_27	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0145136_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0145136_27	Structural annotation	PF05772	NA	NA
UHGV-0145136_28	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145136_28	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0145136_28	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0145136_29	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0145136_29	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0145136_29	Pfam	PF06378	NA	DUF1071
UHGV-0145136_29	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0145136_34	PHROG	phrog_4433	NA	unknown function
UHGV-0145136_34	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0145136_34	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0145136_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0145136_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145136_36	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0145136_36	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0145136_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145136_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0145136_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0145136_37	UniRef90	UniRef90_UPI001ADD7737	ribosomal protein L7/L12	NA
UHGV-0145136_37	eggNOG-mapper	742735.HMPREF9467_00732	zinc-ribbon domain	NA
UHGV-0145136_37	Pfam	PF17032	zinc-ribbon family	zinc_ribbon_15
UHGV-0145136_38	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0145136_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145136_38	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0145136_42	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0145136_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145136_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145136_42	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0145136_43	KOfam	K14059	int; integrase	NA
UHGV-0145136_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0145136_43	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0145136_43	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0145136_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0145136_43	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0145136_43	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA