UHGV-0145222

Genome information

vOTU vOTU-019148

Genome length 29,772 bps

CDS count 57

Completeness 84.59% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145222
vOTU ID	vOTU-019148
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399528
BioSample	SAMN05194723
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.39
Jumbo phage	No

Genome content
Genome length	29,772 bps
GC content	41.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.04%
Average CDS length	481.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145222_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0145222_2	PHROG	phrog_435	endolysin	lysis
UHGV-0145222_2	UniRef90	UniRef90_A0A174JR12	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0145222_2	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0145222_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0145222_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0145222_2	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0145222_4	PHROG	phrog_443	holin	lysis
UHGV-0145222_4	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0145222_4	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-0145222_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0145222_4	Structural annotation	PF16945	NA	NA
UHGV-0145222_5	PHROG	phrog_4105	NA	unknown function
UHGV-0145222_5	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0145222_6	PHROG	phrog_28526	NA	unknown function
UHGV-0145222_6	UniRef90	UniRef90_A0A415D4T1	NA	NA
UHGV-0145222_6	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0145222_8	eggNOG-mapper	1280698.AUJS01000007_gene1053	NA	NA
UHGV-0145222_9	PHROG	phrog_12931	NA	unknown function
UHGV-0145222_9	eggNOG-mapper	1280698.AUJS01000007_gene1052	NA	NA
UHGV-0145222_11	PHROG	phrog_25635	NA	unknown function
UHGV-0145222_11	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0145222_11	Structural annotation	PF20747	NA	NA
UHGV-0145222_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0145222_12	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0145222_12	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0145222_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0145222_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0145222_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0145222_13	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0145222_13	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0145222_13	COG	COG1511	NA	NA
UHGV-0145222_13	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0145222_14	PHROG	phrog_1633	NA	unknown function
UHGV-0145222_14	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-0145222_14	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0145222_14	Pfam	PF17318	NA	DUF5361
UHGV-0145222_14	Structural annotation	PF17318	NA	NA
UHGV-0145222_15	PHROG	phrog_1526	NA	unknown function
UHGV-0145222_15	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0145222_16	PHROG	phrog_117	major tail protein	tail
UHGV-0145222_16	UniRef90	UniRef90_UPI00156E6ACC	phage tail protein	NA
UHGV-0145222_16	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0145222_16	COG	COG5492	NA	NA
UHGV-0145222_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0145222_17	PHROG	phrog_123	tail terminator	connector
UHGV-0145222_17	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0145222_17	Structural annotation	PF06141	NA	NA
UHGV-0145222_18	PHROG	phrog_387	neck protein	connector
UHGV-0145222_19	PHROG	phrog_501	head closure Hc1	connector
UHGV-0145222_19	UniRef90	UniRef90_Q7Y4I1	Gp43	NA
UHGV-0145222_19	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0145222_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0145222_20	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0145222_20	UniRef90	UniRef90_UPI000EB9D93E	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0145222_20	Pfam	PF09355	NA	Phage_Gp19
UHGV-0145222_20	Structural annotation	PF09355	NA	NA
UHGV-0145222_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0145222_22	UniRef90	UniRef90_A0A174L023	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0145222_22	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0145222_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0145222_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0145222_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0145222_23	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0145222_23	UniRef90	UniRef90_A0A3E4GMR3	NA	NA
UHGV-0145222_23	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0145222_23	Pfam	PF14265	NA	DUF4355
UHGV-0145222_23	Structural annotation	PF14265	NA	NA
UHGV-0145222_24	Structural annotation	PF11344	NA	NA
UHGV-0145222_25	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0145222_25	UniRef90	UniRef90_A0A844E763	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0145222_25	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0145222_25	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0145222_26	PHROG	phrog_104	portal protein	head and packaging
UHGV-0145222_26	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0145222_26	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0145222_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0145222_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0145222_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0145222_27	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0145222_27	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-0145222_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0145222_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0145222_28	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0145222_28	Structural annotation	PF19962	NA	NA
UHGV-0145222_29	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145222_29	UniRef90	UniRef90_A0A3E4GMG2	HNH endonuclease	NA
UHGV-0145222_29	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0145222_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0145222_30	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0145222_30	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0145222_30	Pfam	PF07374	NA	DUF1492
UHGV-0145222_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0145222_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0145222_31	UniRef90	UniRef90_UPI001EDD5E1E	Trp family transcriptional regulator	NA
UHGV-0145222_31	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0145222_31	Structural annotation	PF21220, COG2771	NA	NA
UHGV-0145222_37	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0145222_38	PHROG	phrog_8684	NA	unknown function
UHGV-0145222_38	UniRef90	UniRef90_UPI001C0F317C	YopX family protein	NA
UHGV-0145222_38	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0145222_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0145222_40	PHROG	phrog_7566	NA	unknown function
UHGV-0145222_40	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0145222_41	PHROG	phrog_15077	NA	unknown function
UHGV-0145222_41	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0145222_41	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0145222_42	PHROG	phrog_8470	NA	unknown function
UHGV-0145222_42	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0145222_42	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0145222_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0145222_42	Structural annotation	PF14284	NA	NA
UHGV-0145222_43	PHROG	phrog_4433	NA	unknown function
UHGV-0145222_43	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0145222_44	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0145222_45	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0145222_45	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0145222_45	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-0145222_45	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0145222_45	Pfam	PF00075	RNase H	RNase_H
UHGV-0145222_45	COG	COG0328	Ribonuclease HI	NA
UHGV-0145222_45	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0145222_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145222_47	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0145222_47	Structural annotation	PF01446	NA	NA
UHGV-0145222_53	PHROG	phrog_28456	NA	unknown function
UHGV-0145222_54	PHROG	phrog_2232	NA	unknown function
UHGV-0145222_54	UniRef90	UniRef90_A0A417QPJ8	NA	NA
UHGV-0145222_54	eggNOG-mapper	397288.C806_01275	NA	NA
UHGV-0145222_54	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0145222_54	Structural annotation	PF14337, TIGR03899	NA	NA