UHGV-0145280

Genome information

Genome length 28,144 bps

CDS count 45

Completeness 80.20% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145280
vOTU ID	vOTU-030104
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_416757
BioSample	SAMN05414929
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.16
Jumbo phage	No

Genome content
Genome length	28,144 bps
GC content	57.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.63%
Average CDS length	590.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145280_3	UniRef90	UniRef90_A0A396LZ12	NA	NA
UHGV-0145280_3	Structural annotation	PF12957	NA	NA
UHGV-0145280_4	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0145280_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145280_6	PHROG	phrog_37789	NA	unknown function
UHGV-0145280_8	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0145280_12	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0145280_12	PHROG	phrog_200	lipoprotein	other
UHGV-0145280_12	UniRef90	UniRef90_A0A3A6JM18	Prohibitin family protein	NA
UHGV-0145280_12	eggNOG-mapper	748224.HMPREF9436_03073	SPFH Band 7 PHB domain protein	NA
UHGV-0145280_12	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0145280_12	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0145280_12	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0145280_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0145280_14	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0145280_14	Pfam	PF05772	NinB protein	NinB
UHGV-0145280_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0145280_17	PHROG	phrog_7566	NA	unknown function
UHGV-0145280_17	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0145280_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0145280_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145280_18	UniRef90	UniRef90_A0A564SCM1	Single-stranded DNA-binding protein	NA
UHGV-0145280_18	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0145280_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0145280_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0145280_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0145280_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0145280_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0145280_19	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0145280_19	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-0145280_19	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0145280_19	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0145280_19	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0145280_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0145280_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0145280_20	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-0145280_20	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0145280_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0145280_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0145280_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0145280_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0145280_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0145280_22	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0145280_22	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0145280_23	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145280_23	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0145280_23	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0145280_23	Structural annotation	PF01844	NA	NA
UHGV-0145280_24	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0145280_24	Structural annotation	PF19962	NA	NA
UHGV-0145280_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0145280_25	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0145280_25	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0145280_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0145280_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0145280_26	PHROG	phrog_104	portal protein	head and packaging
UHGV-0145280_26	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0145280_26	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0145280_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0145280_27	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0145280_27	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0145280_27	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0145280_27	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0145280_27	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0145280_27	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0145280_27	Structural annotation	PF03496, MF_04139, NF040688	NA	NA
UHGV-0145280_29	PHROG	phrog_3675	NA	unknown function
UHGV-0145280_29	UniRef90	UniRef90_E7FP13	YjcQ protein	NA
UHGV-0145280_29	eggNOG-mapper	713605.ADHG01000003_gene720	YjcQ protein	NA
UHGV-0145280_29	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0145280_29	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0145280_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0145280_30	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0145280_30	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0145280_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0145280_30	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0145280_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0145280_31	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0145280_31	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0145280_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0145280_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0145280_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0145280_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0145280_33	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0145280_33	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0145280_33	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0145280_33	Structural annotation	PF09355	NA	NA
UHGV-0145280_34	PHROG	phrog_501	head closure Hc1	connector
UHGV-0145280_34	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0145280_34	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0145280_34	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0145280_35	PHROG	phrog_387	neck protein	connector
UHGV-0145280_35	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0145280_35	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0145280_36	PHROG	phrog_123	tail terminator	connector
UHGV-0145280_36	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0145280_36	Structural annotation	PF06141	NA	NA
UHGV-0145280_37	PHROG	phrog_117	major tail protein	tail
UHGV-0145280_37	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0145280_37	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0145280_37	COG	COG5492	NA	NA
UHGV-0145280_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0145280_38	PHROG	phrog_1526	NA	unknown function
UHGV-0145280_38	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0145280_39	PHROG	phrog_1633	NA	unknown function
UHGV-0145280_39	UniRef90	UniRef90_UPI001A8DC263	NA	NA
UHGV-0145280_39	eggNOG-mapper	1321372.AQQB01000060_gene71	NA	NA
UHGV-0145280_40	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0145280_40	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0145280_40	COG	COG1511	NA	NA
UHGV-0145280_41	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0145280_41	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0145280_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0145280_41	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0145280_42	PHROG	phrog_3558	tail protein	tail
UHGV-0145280_42	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0145280_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0145280_42	COG	COG4926	Phage-related protein	NA
UHGV-0145280_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0145280_43	PHROG	phrog_9534	head protein	head and packaging
UHGV-0145280_43	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0145280_45	PHROG	phrog_28526	NA	unknown function
UHGV-0145280_45	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0145280_45	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-0145280_45	Pfam	PF04255	NA	DUF433