UHGV-0145294

Genome information

Genome length 38,178 bps

CDS count 56

Completeness 97.40% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145294
vOTU ID	vOTU-009240
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_431091
BioSample	SAMN05545077
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.6
Jumbo phage	No

Genome content
Genome length	38,178 bps
GC content	41.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.65%
Average CDS length	622.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145294_1	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0145294_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0145294_1	UniRef90	UniRef90_UPI001D067699	tyrosine-type recombinase/integrase	NA
UHGV-0145294_1	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0145294_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0145294_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0145294_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0145294_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0145294_2	PHROG	phrog_21357	endolysin	lysis
UHGV-0145294_2	UniRef90	UniRef90_UPI0018658D83	peptidoglycan-binding protein	NA
UHGV-0145294_2	eggNOG-mapper	411468.CLOSCI_00269	cysteine-type peptidase activity	NA
UHGV-0145294_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0145294_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0145294_2	Structural annotation	PF01471, PF10030, TIGR02594, TIGR02869, COG3409, COG0791	NA	NA
UHGV-0145294_3	PHROG	phrog_1129	holin	lysis
UHGV-0145294_3	UniRef90	UniRef90_A0A893W7Y5	Phage holin family protein	NA
UHGV-0145294_3	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0145294_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0145294_3	Structural annotation	PF16079	NA	NA
UHGV-0145294_4	PHROG	phrog_4105	NA	unknown function
UHGV-0145294_4	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0145294_8	PHROG	phrog_6616	tail protein	tail
UHGV-0145294_8	UniRef90	UniRef90_A0A1C5RZB4	Peptidase S74 domain-containing protein	NA
UHGV-0145294_8	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0145294_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0145294_8	COG	COG4926	Phage-related protein	NA
UHGV-0145294_8	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0145294_9	PHROG	phrog_1194	NA	unknown function
UHGV-0145294_9	eggNOG-mapper	1293597.BN147_01415	NA	NA
UHGV-0145294_9	Pfam	PF20458	NA	DUF6711
UHGV-0145294_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0145294_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0145294_10	UniRef90	UniRef90_A0A1C5L9Y5	Phage-related protein	NA
UHGV-0145294_10	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0145294_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0145294_12	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0145294_12	UniRef90	UniRef90_UPI0011DE12FE	NA	NA
UHGV-0145294_12	eggNOG-mapper	1280689.AUJC01000003_gene974	NA	NA
UHGV-0145294_12	Pfam	PF19591	NA	DUF6096
UHGV-0145294_12	Structural annotation	PF19591	NA	NA
UHGV-0145294_13	PHROG	phrog_158	major tail protein	tail
UHGV-0145294_13	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-0145294_13	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0145294_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0145294_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0145294_14	PHROG	phrog_78	tail terminator	connector
UHGV-0145294_14	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0145294_14	Structural annotation	PF05657	NA	NA
UHGV-0145294_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0145294_15	UniRef90	UniRef90_UPI0011DDF215	HK97 gp10 family phage protein	NA
UHGV-0145294_15	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0145294_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0145294_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0145294_16	PHROG	phrog_2168	NA	unknown function
UHGV-0145294_16	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0145294_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0145294_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0145294_17	UniRef90	UniRef90_A0A2S6HSG0	Gp6-like head-tail connector protein	NA
UHGV-0145294_17	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0145294_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0145294_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0145294_18	PHROG	phrog_2724	NA	unknown function
UHGV-0145294_18	UniRef90	UniRef90_A0A3D1FTV4	Transcription termination factor Rho	NA
UHGV-0145294_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0145294_18	Structural annotation	PF07498	NA	NA
UHGV-0145294_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0145294_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0145294_19	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0145294_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0145294_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0145294_20	UniRef90	UniRef90_A0A416MMZ2	NA	NA
UHGV-0145294_20	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0145294_20	Pfam	PF14265	NA	DUF4355
UHGV-0145294_20	Structural annotation	PF14265	NA	NA
UHGV-0145294_21	eggNOG-mapper	411460.RUMTOR_01296	NA	NA
UHGV-0145294_22	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0145294_22	UniRef90	UniRef90_A0A1C5ZQ59	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0145294_22	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0145294_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0145294_22	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0145294_22	COG	COG2369	NA	NA
UHGV-0145294_22	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0145294_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0145294_23	UniRef90	UniRef90_UPI001652B712	phage portal protein	NA
UHGV-0145294_23	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0145294_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0145294_23	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0145294_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0145294_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145294_24	PHROG	phrog_10250	NA	unknown function
UHGV-0145294_24	UniRef90	UniRef90_UPI001C023397	PBSX family phage terminase large subunit	NA
UHGV-0145294_24	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0145294_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0145294_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0145294_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145294_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0145294_26	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0145294_26	UniRef90	UniRef90_UPI001C027893	phage terminase small subunit	NA
UHGV-0145294_26	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0145294_26	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0145294_26	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0145294_26	COG	COG5484	NA	NA
UHGV-0145294_26	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0145294_27	PHROG	phrog_11237	NA	unknown function
UHGV-0145294_27	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0145294_28	PHROG	phrog_6568	NA	unknown function
UHGV-0145294_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0145294_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0145294_29	UniRef90	UniRef90_UPI0019614967	tyrosine-type recombinase/integrase	NA
UHGV-0145294_29	eggNOG-mapper	411461.DORFOR_01160	Belongs to the 'phage' integrase family	NA
UHGV-0145294_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0145294_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0145294_29	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0145294_33	Structural annotation	PF10400	NA	NA
UHGV-0145294_35	PHROG	phrog_9822	NA	unknown function
UHGV-0145294_36	PHROG	phrog_7566	NA	unknown function
UHGV-0145294_36	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0145294_37	PHROG	phrog_15077	NA	unknown function
UHGV-0145294_37	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0145294_38	PHROG	phrog_8470	NA	unknown function
UHGV-0145294_38	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0145294_38	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0145294_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0145294_38	Structural annotation	PF14284	NA	NA
UHGV-0145294_39	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0145294_40	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0145294_40	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0145294_40	UniRef90	UniRef90_A0A6N9JSQ7	RNase H type-1 domain-containing protein	NA
UHGV-0145294_40	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0145294_40	Pfam	PF00075	RNase H	RNase_H
UHGV-0145294_40	COG	COG0328	Ribonuclease HI	NA
UHGV-0145294_40	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0145294_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145294_42	eggNOG-mapper	411461.DORFOR_01138	NA	NA
UHGV-0145294_42	Structural annotation	PF01446	NA	NA
UHGV-0145294_51	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0145294_51	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145294_51	UniRef90	UniRef90_A0A173RBE6	Antitoxin PezA	NA
UHGV-0145294_51	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0145294_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145294_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145294_51	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0145294_53	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0145294_53	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0145294_53	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0145294_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0145294_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0145294_55	UniRef90	UniRef90_A0A173SBX0	DNA-invertase hin	NA
UHGV-0145294_55	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0145294_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0145294_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0145294_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0145294_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0145294_55	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0145294_56	UniRef90	UniRef90_R6G3J8	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0145294_56	eggNOG-mapper	411462.DORLON_00563	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0145294_56	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA