UHGV-0145324

Genome information

Genome length 40,793 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145324
vOTU ID	vOTU-046083
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_406691
BioSample	SAMN05414942
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.08
Jumbo phage	No

Genome content
Genome length	40,793 bps
GC content	54.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	90.49%
Average CDS length	508.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145324_1	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0145324_1	PHROG	phrog_27197	NA	unknown function
UHGV-0145324_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0145324_1	Structural annotation	NF007410	NA	NA
UHGV-0145324_2	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0145324_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145324_4	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0145324_4	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0145324_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0145324_4	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0145324_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0145324_4	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0145324_5	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0145324_5	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0145324_5	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0145324_5	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0145324_5	Pfam	PF03837	RecT family	RecT
UHGV-0145324_5	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0145324_5	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0145324_5	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0145324_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0145324_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145324_6	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0145324_6	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0145324_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0145324_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0145324_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0145324_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0145324_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0145324_8	PHROG	phrog_15768	NA	unknown function
UHGV-0145324_8	UniRef90	UniRef90_A0A810PZI8	NA	NA
UHGV-0145324_8	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0145324_8	AcrCatalog	cluster_38323	NA	NA
UHGV-0145324_8	Pfam	PF19808	NA	DUF6291
UHGV-0145324_8	Structural annotation	PF19808	NA	NA
UHGV-0145324_9	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0145324_9	PHROG	phrog_17284	NA	unknown function
UHGV-0145324_9	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0145324_9	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0145324_9	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0145324_9	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0145324_9	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0145324_9	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0145324_12	PHROG	phrog_38832	NA	unknown function
UHGV-0145324_12	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0145324_13	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0145324_13	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0145324_13	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0145324_14	PHROG	phrog_3136	NA	unknown function
UHGV-0145324_14	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0145324_14	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0145324_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0145324_17	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-0145324_17	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0145324_17	Pfam	PF06356	NA	DUF1064
UHGV-0145324_17	Structural annotation	PF06356	NA	NA
UHGV-0145324_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0145324_21	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0145324_22	Pfam	PF04297	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
UHGV-0145324_22	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0145324_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0145324_23	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0145324_23	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0145324_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0145324_23	Structural annotation	PF16677	NA	NA
UHGV-0145324_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145324_24	PHROG	phrog_10250	NA	unknown function
UHGV-0145324_24	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0145324_24	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0145324_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0145324_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0145324_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0145324_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145324_24	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0145324_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0145324_25	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0145324_25	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0145324_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0145324_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0145324_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0145324_26	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0145324_26	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0145324_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0145324_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0145324_26	COG	COG2369	NA	NA
UHGV-0145324_26	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0145324_28	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0145324_28	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0145324_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0145324_29	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145324_29	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0145324_31	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0145324_31	Structural annotation	PF06810	NA	NA
UHGV-0145324_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0145324_32	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0145324_32	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0145324_32	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0145324_32	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0145324_34	PHROG	phrog_17977	NA	unknown function
UHGV-0145324_34	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0145324_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0145324_35	eggNOG-mapper	645991.Sgly_0337	NA	NA
UHGV-0145324_36	PHROG	phrog_17405	head protein	head and packaging
UHGV-0145324_36	Structural annotation	PF11367	NA	NA
UHGV-0145324_37	PHROG	phrog_885	major tail protein	tail
UHGV-0145324_37	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0145324_37	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0145324_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0145324_38	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0145324_40	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0145324_40	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0145324_40	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0145324_40	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0145324_40	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0145324_41	PHROG	phrog_1194	NA	unknown function
UHGV-0145324_41	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0145324_42	PHROG	phrog_32744	NA	unknown function
UHGV-0145324_42	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0145324_42	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0145324_44	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0145324_45	PHROG	phrog_31538	NA	unknown function
UHGV-0145324_46	PHROG	phrog_13589	NA	unknown function
UHGV-0145324_46	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0145324_47	PHROG	phrog_37900	NA	unknown function
UHGV-0145324_47	UniRef90	UniRef90_UPI001897C7B4	NA	NA
UHGV-0145324_47	eggNOG-mapper	658086.HMPREF0994_01093	cellulose binding	NA
UHGV-0145324_47	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0145324_47	Pfam	PF19789	NA	DUF6273
UHGV-0145324_47	COG	COG4447	NA	NA
UHGV-0145324_47	Structural annotation	PF19789, PF14686	NA	NA
UHGV-0145324_50	PHROG	phrog_4105	NA	unknown function
UHGV-0145324_51	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0145324_51	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0145324_52	PHROG	phrog_13256	NA	unknown function
UHGV-0145324_52	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0145324_53	PHROG	phrog_21357	endolysin	lysis
UHGV-0145324_53	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0145324_53	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0145324_53	Pfam	PF05257	CHAP domain	CHAP
UHGV-0145324_53	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0145324_53	COG	COG1388	LysM repeat	NA
UHGV-0145324_53	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0145324_55	PHROG	phrog_3754	NA	unknown function
UHGV-0145324_55	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0145324_56	PHROG	phrog_21718	NA	unknown function
UHGV-0145324_56	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0145324_57	PHROG	phrog_22984	NA	unknown function
UHGV-0145324_58	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145324_58	UniRef90	UniRef90_UPI00104E996D	NUMOD4 domain-containing protein	NA
UHGV-0145324_58	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-0145324_58	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0145324_58	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0145324_58	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0145324_58	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0145324_59	PHROG	phrog_16490	NA	unknown function
UHGV-0145324_59	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0145324_60	PHROG	phrog_20016	NA	unknown function
UHGV-0145324_60	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0145324_60	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0145324_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0145324_61	PHROG	phrog_28802	NA	unknown function
UHGV-0145324_62	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0145324_63	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0145324_63	PHROG	phrog_95	integrase	integration and excision
UHGV-0145324_63	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0145324_63	eggNOG-mapper	903814.ELI_4654	Resolvase, N terminal domain	NA
UHGV-0145324_63	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0145324_63	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0145324_63	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0145324_63	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0145324_64	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0145324_64	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145324_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0145324_64	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0145324_65	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-0145324_65	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0145324_65	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0145324_69	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0145324_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145324_69	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0145324_69	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145324_69	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0145324_70	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0145324_70	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145324_70	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0145324_70	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0145324_70	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0145324_70	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0145324_70	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0145324_72	PHROG	phrog_22529	NA	unknown function
UHGV-0145324_72	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0145324_72	eggNOG-mapper	457412.RSAG_01849	3D domain	NA
UHGV-0145324_72	Pfam	PF06725	3D domain	3D
UHGV-0145324_72	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0145324_72	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0145324_73	PHROG	phrog_4433	NA	unknown function
UHGV-0145324_73	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0145324_73	COG	COG5164	Transcription elongation factor SPT5	NA