UHGV-0145327

Genome information

Genome length 35,087 bps

CDS count 52

Completeness 87.28% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145327
vOTU ID	vOTU-026657
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_428803
BioSample	SAMN05545099
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	40
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	107.56
Jumbo phage	No

Genome content
Genome length	35,087 bps
GC content	47.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.61%
Average CDS length	603.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145327_1	KOfam	K16709	amsF; amylovoran biosynthesis protein AmsF	NA
UHGV-0145327_1	PHROG	phrog_8280	tail spike protein with colonic acid degradation activity	tail
UHGV-0145327_1	UniRef90	UniRef90_A0A3K0K1T2	Peptidase S74 (Fragment)	NA
UHGV-0145327_1	eggNOG-mapper	155148.Q9AYY6_BPHK6	pathogenesis	NA
UHGV-0145327_1	Pfam	PF09008	Head binding	Head_binding
UHGV-0145327_1	Pfam	PF12218	N terminal extension of bacteriophage endosialidase	End_N_terminal
UHGV-0145327_3	PHROG	phrog_795	partition protein ATPase	other
UHGV-0145327_3	UniRef90	UniRef90_A0A377LI52	Putative transcriptional repressor	NA
UHGV-0145327_3	eggNOG-mapper	329864.B8K1J0_9CAUD	Arc-like DNA binding domain	NA
UHGV-0145327_3	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0145327_3	Pfam	PF11423	Regulatory protein Mnt	Repressor_Mnt
UHGV-0145327_3	Structural annotation	PF03869, TIGR04563, COG4877	NA	NA
UHGV-0145327_4	PHROG	phrog_2384	NA	unknown function
UHGV-0145327_4	UniRef90	UniRef90_A0A411H6L9	P63C domain-containing protein	NA
UHGV-0145327_4	eggNOG-mapper	1336237.JAEE01000001_gene2078	P63C domain	NA
UHGV-0145327_4	Pfam	PF10546	P63C domain	P63C
UHGV-0145327_4	Structural annotation	PF10546	NA	NA
UHGV-0145327_5	PHROG	phrog_2651	NA	unknown function
UHGV-0145327_5	eggNOG-mapper	1187848.AJYQ01000107_gene1290	NA	NA
UHGV-0145327_5	Structural annotation	PF16960, MF_01459, NF041562	NA	NA
UHGV-0145327_6	PHROG	phrog_770	DNA transfer protein	other
UHGV-0145327_6	UniRef90	UniRef90_A0A4V5FRM6	DNA transfer protein	NA
UHGV-0145327_6	eggNOG-mapper	754331.AEME01000001_gene16	NA	NA
UHGV-0145327_7	PHROG	phrog_917	released from the phage upon host infection	other
UHGV-0145327_7	UniRef90	UniRef90_UPI000DFBC317	phage DNA ejection protein	NA
UHGV-0145327_7	eggNOG-mapper	754331.AEME01000001_gene15	DNA/protein translocase of phage P22 injectosome	NA
UHGV-0145327_7	Pfam	PF16928	DNA/protein translocase of phage P22 injectosome	Inj_translocase
UHGV-0145327_7	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0145327_7	Structural annotation	PF16928	NA	NA
UHGV-0145327_8	PHROG	phrog_598	DNA ejection	DNA, RNA and nucleotide metabolism
UHGV-0145327_8	UniRef90	UniRef90_Q716G4	Gene 11 protein	NA
UHGV-0145327_8	eggNOG-mapper	155148.VG07_BPHK6	viral entry into host cell	NA
UHGV-0145327_9	PHROG	phrog_651	head morphogenesis	head and packaging
UHGV-0145327_9	UniRef90	UniRef90_G8EYJ5	Head assembly protein	NA
UHGV-0145327_9	eggNOG-mapper	1090133.G8EYJ5_9CAUD	NA	NA
UHGV-0145327_9	Pfam	PF11039	NA	DUF2824
UHGV-0145327_9	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0145327_10	PHROG	phrog_1219	tail needle protein	tail
UHGV-0145327_10	UniRef90	UniRef90_UPI001981F4D8	phage tail protein	NA
UHGV-0145327_10	eggNOG-mapper	1090133.G5DA78_9CAUD	NA	NA
UHGV-0145327_11	PHROG	phrog_578	head closure Hc3	connector
UHGV-0145327_11	UniRef90	UniRef90_P26749	Packaged DNA stabilization protein gp10	NA
UHGV-0145327_11	eggNOG-mapper	155148.Q9AYZ4_BPHK6	Phage stabilisation protein	NA
UHGV-0145327_11	Pfam	PF11134	Phage stabilisation protein	Phage_stabilise
UHGV-0145327_11	Structural annotation	PF11134, MF_01282, NF000022, NF038128, COG3292	NA	NA
UHGV-0145327_12	PHROG	phrog_637	head-tail adaptor Ad3	connector
UHGV-0145327_12	UniRef90	UniRef90_A0A066T024	DNA stabilization protein	NA
UHGV-0145327_12	eggNOG-mapper	754331.AEME01000001_gene10	Packaged DNA stabilization protein gp4	NA
UHGV-0145327_12	Pfam	PF11650	P22 tail accessory factor	P22_Tail-4
UHGV-0145327_12	Structural annotation	PF11650	NA	NA
UHGV-0145327_13	PHROG	phrog_1175	NA	unknown function
UHGV-0145327_14	PHROG	phrog_283	major head protein	head and packaging
UHGV-0145327_14	UniRef90	UniRef90_A0A7L7ST24	Coat protein	NA
UHGV-0145327_14	eggNOG-mapper	754331.AEME01000001_gene8	P22 coat protein - gene protein 5	NA
UHGV-0145327_14	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0145327_14	Structural annotation	PF11651, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0145327_15	PHROG	phrog_648	head scaffolding protein	head and packaging
UHGV-0145327_15	UniRef90	UniRef90_A0A6C9DRL0	Scaffolding protein	NA
UHGV-0145327_15	eggNOG-mapper	754331.AEME01000001_gene7	NA	NA
UHGV-0145327_15	Structural annotation	PF09306	NA	NA
UHGV-0145327_16	PHROG	phrog_14911	NA	unknown function
UHGV-0145327_16	UniRef90	UniRef90_E9TCA7	Putative ATP synthase F1, epsilon subunit	NA
UHGV-0145327_16	eggNOG-mapper	1524881.A0A088CQ69_9CAUD	actin binding	NA
UHGV-0145327_16	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0145327_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0145327_17	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0145327_17	UniRef90	UniRef90_A0A7U3N6C4	Terminase, large subunit	NA
UHGV-0145327_17	eggNOG-mapper	1127357.I1TEI5_9CAUD	Terminase-like family	NA
UHGV-0145327_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0145327_17	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0145327_17	HAMAP	MF_04148	Terminase, large subunit	NA
UHGV-0145327_17	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0145327_18	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0145327_18	UniRef90	UniRef90_A0A377CAD4	DNA packaging protein gp3 (Terminase small subunit)	NA
UHGV-0145327_18	eggNOG-mapper	1090133.G8EYI7_9CAUD	Pfam:GP3_package	NA
UHGV-0145327_18	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0145327_18	Structural annotation	PF16677	NA	NA
UHGV-0145327_19	PHROG	phrog_571	NA	unknown function
UHGV-0145327_19	UniRef90	UniRef90_A0A067HHZ1	NA	NA
UHGV-0145327_19	eggNOG-mapper	10761.Q716B0_BPSFV	NA	NA
UHGV-0145327_19	Pfam	PF10834	NA	DUF2560
UHGV-0145327_19	Structural annotation	PF10834	NA	NA
UHGV-0145327_20	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0145327_20	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0145327_20	UniRef90	UniRef90_A0A827GK57	Lysis protein	NA
UHGV-0145327_20	eggNOG-mapper	10761.Q716B4_BPSFV	Bacteriophage Rz lysis protein	NA
UHGV-0145327_20	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0145327_20	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0145327_20	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0145327_21	PHROG	phrog_17029	NA	unknown function
UHGV-0145327_21	UniRef90	UniRef90_P03706	Endolysin	NA
UHGV-0145327_21	eggNOG-mapper	1524881.A0A088CPU7_9CAUD	Phage lysozyme	NA
UHGV-0145327_21	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0145327_21	HAMAP	MF_04109	Endolysin	NA
UHGV-0145327_21	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-0145327_22	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0145327_22	UniRef90	UniRef90_P03705	Antiholin	NA
UHGV-0145327_22	eggNOG-mapper	10761.Q716B7_BPSFV	Pfam:Phage_holin_3_1	NA
UHGV-0145327_22	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0145327_22	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0145327_22	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0145327_23	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0145327_23	UniRef90	UniRef90_P03047	Antitermination protein Q	NA
UHGV-0145327_23	eggNOG-mapper	10710.REGQ_LAMBD	unfolded protein binding	NA
UHGV-0145327_23	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0145327_23	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0145327_24	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0145327_24	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145327_24	UniRef90	UniRef90_A0A152CN92	Serine/threonine protein phosphatase	NA
UHGV-0145327_24	eggNOG-mapper	432201.K7P7K6_9CAUD	hydrolase activity	NA
UHGV-0145327_24	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0145327_24	Structural annotation	PF12850, MF_01443, NF008516, COG0622	NA	NA
UHGV-0145327_25	PHROG	phrog_268	NA	unknown function
UHGV-0145327_25	UniRef90	UniRef90_P03771	Protein ninH	NA
UHGV-0145327_25	eggNOG-mapper	10710.NINH_LAMBD	Phage NinH protein	NA
UHGV-0145327_25	Pfam	PF06322	Phage NinH protein	Phage_NinH
UHGV-0145327_25	Structural annotation	PF06322	NA	NA
UHGV-0145327_26	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145327_26	UniRef90	UniRef90_UPI0002511365	recombination protein NinG	NA
UHGV-0145327_26	eggNOG-mapper	155864.EDL933_3805	Corresponds to locus_tag	NA
UHGV-0145327_26	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0145327_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0145327_26	Structural annotation	PF05766	NA	NA
UHGV-0145327_27	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145327_27	UniRef90	UniRef90_Q8X989	HNHc domain-containing protein	NA
UHGV-0145327_27	eggNOG-mapper	1440052.EAKF1_ch3952	HNH endonuclease	NA
UHGV-0145327_27	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0145327_28	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0145327_28	UniRef90	UniRef90_A0A086UID1	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-0145327_28	eggNOG-mapper	1524881.A0A088CQ83_9CAUD	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0145327_28	PADLOC	oMTase_00010	orphan methyltransferase	RM
UHGV-0145327_28	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0145327_28	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0145327_28	Structural annotation	PF05869, MF_01872, TIGR01712, COG4123	NA	NA
UHGV-0145327_29	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0145327_29	UniRef90	UniRef90_P03765	Protein ninB	NA
UHGV-0145327_29	eggNOG-mapper	199310.c1554	NinB protein	NA
UHGV-0145327_29	Pfam	PF05772	NinB protein	NinB
UHGV-0145327_29	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0145327_30	PHROG	phrog_6308	NA	unknown function
UHGV-0145327_31	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0145327_31	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0145327_31	UniRef90	UniRef90_A0A2V2J552	DNA helicase	NA
UHGV-0145327_31	eggNOG-mapper	254397.B6ETB7_9CAUD	DnaB-like helicase N terminal domain	NA
UHGV-0145327_31	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0145327_31	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0145327_31	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0145327_32	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0145327_32	UniRef90	UniRef90_B7LUB6	Phage_rep_O domain-containing protein	NA
UHGV-0145327_32	eggNOG-mapper	754331.AEME01000001_gene3595	Bacteriophage replication protein O	NA
UHGV-0145327_32	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0145327_32	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0145327_33	PHROG	phrog_2519	NA	unknown function
UHGV-0145327_34	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0145327_34	UniRef90	UniRef90_P03043	Regulatory protein CII	NA
UHGV-0145327_34	eggNOG-mapper	1147147.K7P6Y2_9CAUD	Bacteriophage CII protein	NA
UHGV-0145327_34	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0145327_34	Structural annotation	PF05269	NA	NA
UHGV-0145327_35	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0145327_35	UniRef90	UniRef90_A0A0C2EQC9	Antirepressor protein Cro	NA
UHGV-0145327_35	eggNOG-mapper	906669.G8C7U2_9CAUD	Pfam:YdaS_antitoxin	NA
UHGV-0145327_35	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0145327_35	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0145327_36	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0145327_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0145327_36	UniRef90	UniRef90_A0A136R0T5	Helix-turn-helix transcriptional regulator	NA
UHGV-0145327_36	eggNOG-mapper	371042.NG99_17000	Peptidase S24-like	NA
UHGV-0145327_36	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0145327_36	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0145327_37	PHROG	phrog_18389	NA	unknown function
UHGV-0145327_38	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0145327_38	UniRef90	UniRef90_K7PH69	Antitermination protein N	NA
UHGV-0145327_38	eggNOG-mapper	1147146.K7P8A7_9CAUD	NA	NA
UHGV-0145327_39	PHROG	phrog_1301	superinfection exclusion; inhibits SieB	moron, auxiliary metabolic gene and host takeover
UHGV-0145327_39	UniRef90	UniRef90_K7P6T7	Superinfection exclusion protein	NA
UHGV-0145327_39	eggNOG-mapper	155864.EDL933_3263	Super-infection exclusion protein B	NA
UHGV-0145327_39	Pfam	PF14163	Super-infection exclusion protein B	SieB
UHGV-0145327_40	PHROG	phrog_1510	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0145327_40	UniRef90	UniRef90_O48416	Protein gp17	NA
UHGV-0145327_40	eggNOG-mapper	173443.Q8HAH1_BPST6	Pfam:Gp17	NA
UHGV-0145327_40	Pfam	PF17420	Superinfection exclusion gene product 17	GP17
UHGV-0145327_41	PHROG	phrog_550	CIII anti-termination	transcription regulation
UHGV-0145327_41	eggNOG-mapper	1127357.I1TEF0_9CAUD	NA	NA
UHGV-0145327_42	PHROG	phrog_17766	NA	unknown function
UHGV-0145327_43	PHROG	phrog_3486	NA	unknown function
UHGV-0145327_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0145327_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0145327_44	UniRef90	UniRef90_A0A0P7Q6C4	DNA recombinase	NA
UHGV-0145327_44	eggNOG-mapper	1147153.K7PKG9_9CAUD	DNA metabolic process	NA
UHGV-0145327_44	Pfam	PF03837	RecT family	RecT
UHGV-0145327_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0145327_44	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0145327_45	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0145327_45	UniRef90	UniRef90_A0A4U6LP76	Siphovirus Gp157 family protein	NA
UHGV-0145327_45	eggNOG-mapper	1147143.K7P6T5_9CAUD	Siphovirus Gp157	NA
UHGV-0145327_45	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0145327_45	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0145327_46	PHROG	phrog_11492	NA	unknown function
UHGV-0145327_46	eggNOG-mapper	716541.ECL_01293	NA	NA
UHGV-0145327_47	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145327_47	UniRef90	UniRef90_A0A2R3NM21	Gene 24 protein	NA
UHGV-0145327_47	eggNOG-mapper	1147145.K7P7M4_9CAUD	NA	NA
UHGV-0145327_47	Pfam	PF17399	NA	DUF5405
UHGV-0145327_47	Structural annotation	PF17399	NA	NA
UHGV-0145327_48	PHROG	phrog_1117	NA	unknown function
UHGV-0145327_48	UniRef90	UniRef90_UPI0015D5BEA6	NA	NA
UHGV-0145327_48	eggNOG-mapper	1524881.A0A088CPT5_9CAUD	NA	NA
UHGV-0145327_48	Pfam	PF10930	NA	DUF2737
UHGV-0145327_48	Structural annotation	PF10930	NA	NA
UHGV-0145327_49	PHROG	phrog_614	NA	unknown function
UHGV-0145327_49	UniRef90	UniRef90_A0A136X917	Eae protein	NA
UHGV-0145327_49	eggNOG-mapper	1440052.EAKF1_ch1784	NA	NA
UHGV-0145327_50	PHROG	phrog_4446	NA	unknown function
UHGV-0145327_50	UniRef90	UniRef90_A0A7U7IG67	Putative phage protein	NA
UHGV-0145327_50	eggNOG-mapper	585.DR95_344	NA	NA
UHGV-0145327_51	PHROG	phrog_250	NA	unknown function
UHGV-0145327_51	UniRef90	UniRef90_UPI0011176141	ead/Ea22-like family protein	NA
UHGV-0145327_51	eggNOG-mapper	1147147.K7P6J7_9CAUD	Ead/Ea22-like protein	NA
UHGV-0145327_51	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0145327_52	PHROG	phrog_6847	NA	unknown function
UHGV-0145327_52	UniRef90	UniRef90_UPI0002A2C7ED	NA	NA
UHGV-0145327_52	eggNOG-mapper	1147144.K7P6H7_9CAUD	NA	NA