UHGV-0145394

Genome information

Genome length 12,593 bps

CDS count 18

Completeness 99.18% (high-quality)

geNomad score 0.9675

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145394
vOTU ID	vOTU-011083
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399248
BioSample	SAMN05356879
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9675
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.55
Jumbo phage	No

Genome content
Genome length	12,593 bps
GC content	40.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	78.92%
Average CDS length	557.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145394_1	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0145394_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145394_1	UniRef90	UniRef90_C0BF02	DNA-binding helix-turn-helix protein	NA
UHGV-0145394_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0145394_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0145394_2	eggNOG-mapper	1304866.K413DRAFT_3062	NA	NA
UHGV-0145394_2	Structural annotation	PF20063, TIGR01764	NA	NA
UHGV-0145394_3	PHROG	phrog_2113	NA	unknown function
UHGV-0145394_3	UniRef90	UniRef90_A0A3A6EZF7	HTH domain-containing protein	NA
UHGV-0145394_3	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0145394_4	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0145394_4	UniRef90	UniRef90_R5HZ90	DNA replication protein	NA
UHGV-0145394_4	eggNOG-mapper	1298920.KI911353_gene2060	DnaD domain protein	NA
UHGV-0145394_4	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0145394_4	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0145394_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0145394_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0145394_5	UniRef90	UniRef90_A0A1C5UDY5	DNA helicase	NA
UHGV-0145394_5	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0145394_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0145394_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0145394_5	COG	COG0305	Replicative DNA helicase	NA
UHGV-0145394_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0145394_8	KOfam	K03087	rpoS; RNA polymerase nonessential primary-like sigma factor	NA
UHGV-0145394_8	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0145394_8	UniRef90	UniRef90_UPI001D08A184	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0145394_8	eggNOG-mapper	1235798.C817_02637	Sigma-70 region 2	NA
UHGV-0145394_8	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0145394_8	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0145394_8	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0145394_8	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0145394_8	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0145394_8	Structural annotation	PF04545, PF04542, PF04539, MF_00959, TIGR02980, COG0568	NA	NA
UHGV-0145394_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0145394_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0145394_9	UniRef90	UniRef90_A0A412ZSM6	Terminase small subunit	NA
UHGV-0145394_9	eggNOG-mapper	861454.HMPREF9099_00529	Terminase small subunit	NA
UHGV-0145394_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0145394_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0145394_9	Structural annotation	PF03592	NA	NA
UHGV-0145394_10	UniRef90	UniRef90_A0A412ZSL7	XRE family transcriptional regulator	NA
UHGV-0145394_10	eggNOG-mapper	1151292.QEW_4439	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0145394_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0145394_10	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0145394_11	eggNOG-mapper	478749.BRYFOR_09933	NA	NA
UHGV-0145394_15	KOfam	K14059	int; integrase	NA
UHGV-0145394_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0145394_15	UniRef90	UniRef90_A0A494ZSB8	Site-specific integrase	NA
UHGV-0145394_15	eggNOG-mapper	478749.BRYFOR_09936	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0145394_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0145394_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0145394_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0145394_15	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0145394_17	KOfam	K21071	pfk, pfp; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]	NA
UHGV-0145394_17	PHROG	phrog_9896	phosphofructokinase	other
UHGV-0145394_17	UniRef90	UniRef90_A0A174FT44	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase	NA
UHGV-0145394_17	eggNOG-mapper	411462.DORLON_02004	Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP-PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions	NA
UHGV-0145394_17	Pfam	PF00365	Phosphofructokinase	PFK
UHGV-0145394_17	NCBIFam	NF010675.0	diphosphate--fructose-6-phosphate 1-phosphotransferase	NA
UHGV-0145394_17	COG	COG0205	6-phosphofructokinase	NA
UHGV-0145394_17	HAMAP	MF_01978	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]	NA
UHGV-0145394_18	KOfam	K01893	NARS, asnS; asparaginyl-tRNA synthetase [EC:6.1.1.22]	NA
UHGV-0145394_18	PHROG	phrog_19509	NA	unknown function
UHGV-0145394_18	UniRef90	UniRef90_A0A174DLF2	Asparagine--tRNA ligase	NA
UHGV-0145394_18	eggNOG-mapper	411462.DORLON_02003	tRNA synthetases class II (D, K and N)	NA
UHGV-0145394_18	Pfam	PF01336	OB-fold nucleic acid binding domain	tRNA_anti-codon
UHGV-0145394_18	Pfam	PF00152	tRNA synthetases class II (D, K and N)	tRNA-synt_2
UHGV-0145394_18	NCBIFam	NF003037.0	asparagine--tRNA ligase	NA
UHGV-0145394_18	COG	COG0017	Aspartyl/asparaginyl-tRNA synthetase	NA