UHGV-0145535

Genome information

Genome length 30,707 bps

CDS count 45

Completeness 58.51% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145535
vOTU ID	vOTU-029954
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_401334
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	58.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.42
Jumbo phage	No

Genome content
Genome length	30,707 bps
GC content	56.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.87%
Average CDS length	630.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145535_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0145535_1	PHROG	phrog_12862	NA	unknown function
UHGV-0145535_1	UniRef90	UniRef90_A0A1Y4IHD3	Methyltransferase	NA
UHGV-0145535_1	eggNOG-mapper	665956.HMPREF1032_03611	DNA methylase	NA
UHGV-0145535_1	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0145535_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0145535_1	COG	COG0863	DNA modification methylase	NA
UHGV-0145535_1	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0145535_2	PHROG	phrog_1129	holin	lysis
UHGV-0145535_2	UniRef90	UniRef90_A0A843HPK9	Phage holin family protein	NA
UHGV-0145535_2	eggNOG-mapper	665956.HMPREF1032_01916	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0145535_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0145535_2	Structural annotation	PF16079	NA	NA
UHGV-0145535_3	PHROG	phrog_11037	NA	unknown function
UHGV-0145535_3	UniRef90	UniRef90_A0A6I3QQJ9	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0145535_3	eggNOG-mapper	665956.HMPREF1032_03271	NA	NA
UHGV-0145535_3	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0145535_5	Structural annotation	PF21253, NF038128, COG5156	NA	NA
UHGV-0145535_6	Structural annotation	PF11514	NA	NA
UHGV-0145535_7	PHROG	phrog_1220	head protein	head and packaging
UHGV-0145535_7	UniRef90	UniRef90_A0A6C2C551	BppU_IgG domain-containing protein	NA
UHGV-0145535_7	eggNOG-mapper	397290.C810_00432	COG NOG18825 non supervised orthologous group	NA
UHGV-0145535_7	Structural annotation	PF20747	NA	NA
UHGV-0145535_8	PHROG	phrog_538	minor tail protein	tail
UHGV-0145535_8	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0145535_8	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0145535_8	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0145535_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0145535_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0145535_9	UniRef90	UniRef90_A0A8J6IR89	Phage tail family protein	NA
UHGV-0145535_9	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0145535_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0145535_9	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0145535_10	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0145535_10	UniRef90	UniRef90_A0A6N3F627	TMP_3 domain-containing protein	NA
UHGV-0145535_10	eggNOG-mapper	665956.HMPREF1032_02942	Phage tail tape measure protein TP901	NA
UHGV-0145535_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0145535_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0145535_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0145535_10	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0145535_11	PHROG	phrog_706	NA	unknown function
UHGV-0145535_11	UniRef90	UniRef90_A0A6N3F5V9	Bacteriophage Gp15 protein	NA
UHGV-0145535_11	eggNOG-mapper	665956.HMPREF1032_02943	Bacteriophage Gp15 protein	NA
UHGV-0145535_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0145535_11	Structural annotation	PF06854	NA	NA
UHGV-0145535_12	PHROG	phrog_4450	NA	unknown function
UHGV-0145535_12	eggNOG-mapper	411470.RUMGNA_02225	NA	NA
UHGV-0145535_12	Pfam	PF20378	NA	DUF6673
UHGV-0145535_12	Structural annotation	PF20378	NA	NA
UHGV-0145535_13	PHROG	phrog_820	major tail protein	tail
UHGV-0145535_13	UniRef90	UniRef90_A0A412UWV6	S-l_SbsC_C domain-containing protein	NA
UHGV-0145535_13	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-0145535_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0145535_14	PHROG	phrog_3266	tail completion	connector
UHGV-0145535_14	UniRef90	UniRef90_UPI001178914F	chloramphenicol resistance protein	NA
UHGV-0145535_14	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-0145535_14	Structural annotation	PF12691	NA	NA
UHGV-0145535_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0145535_15	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0145535_15	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0145535_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0145535_15	Structural annotation	PF11114	NA	NA
UHGV-0145535_16	PHROG	phrog_3366	NA	unknown function
UHGV-0145535_16	eggNOG-mapper	663278.Ethha_0096	NA	NA
UHGV-0145535_16	Pfam	PF20536	NA	DUF6751
UHGV-0145535_16	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0145535_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0145535_17	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0145535_18	PHROG	phrog_267	major head protein	head and packaging
UHGV-0145535_18	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0145535_18	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0145535_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0145535_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0145535_19	UniRef90	UniRef90_A0A6N3F6J3	Phage minor structural protein GP20	NA
UHGV-0145535_19	eggNOG-mapper	665956.HMPREF1032_02952	Phage minor structural protein GP20	NA
UHGV-0145535_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0145535_19	Structural annotation	PF06810	NA	NA
UHGV-0145535_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0145535_22	UniRef90	UniRef90_A0A6N3F6N5	Epidermal cell differentiation inhibitor	NA
UHGV-0145535_22	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-0145535_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0145535_22	COG	COG2369	NA	NA
UHGV-0145535_22	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0145535_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0145535_23	UniRef90	UniRef90_G9RTS1	A118 family phage portal protein, putative	NA
UHGV-0145535_23	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0145535_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0145535_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145535_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0145535_25	UniRef90	UniRef90_G9RTS3	PBSX family phage terminase, large subunit	NA
UHGV-0145535_25	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0145535_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0145535_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0145535_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0145535_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145535_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0145535_26	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0145535_28	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0145535_28	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0145535_28	UniRef90	UniRef90_A0A1Y4TKE7	NGN domain-containing protein	NA
UHGV-0145535_28	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-0145535_28	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0145535_28	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0145535_28	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0145535_29	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0145535_29	UniRef90	UniRef90_UPI000AA50A3B	NA	NA
UHGV-0145535_29	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0145535_29	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0145535_29	Structural annotation	PF11985	NA	NA
UHGV-0145535_30	PHROG	phrog_25462	NA	unknown function
UHGV-0145535_30	UniRef90	UniRef90_A0A349GP70	Type VI secretion protein	NA
UHGV-0145535_30	eggNOG-mapper	665956.HMPREF1032_01632	NA	NA
UHGV-0145535_30	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0145535_31	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-0145535_31	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-0145535_32	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0145535_32	UniRef90	UniRef90_A0A1Y4THR2	Mor domain-containing protein	NA
UHGV-0145535_32	eggNOG-mapper	665956.HMPREF1032_04096	Mor transcription activator family	NA
UHGV-0145535_32	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0145535_32	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0145535_32	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0145535_33	PHROG	phrog_286	NA	unknown function
UHGV-0145535_33	UniRef90	UniRef90_A0A372V1N5	Regulatory protein GemA	NA
UHGV-0145535_33	eggNOG-mapper	665956.HMPREF1032_04095	NA	NA
UHGV-0145535_33	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0145535_33	Structural annotation	PF06252	NA	NA
UHGV-0145535_34	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0145535_34	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0145535_34	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-0145535_34	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0145535_34	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0145535_37	eggNOG-mapper	445972.ANACOL_00520	NA	NA
UHGV-0145535_38	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0145535_38	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0145535_38	UniRef90	UniRef90_A0A372V134	ATP-binding protein	NA
UHGV-0145535_38	eggNOG-mapper	552398.HMPREF0866_03135	AAA domain	NA
UHGV-0145535_38	Pfam	PF13401	AAA domain	AAA_22
UHGV-0145535_38	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0145535_38	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0145535_39	PHROG	phrog_310	transposase	integration and excision
UHGV-0145535_39	UniRef90	UniRef90_D1PRI1	Mu transposase domain protein	NA
UHGV-0145535_39	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0145535_39	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0145535_39	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0145535_39	Pfam	PF00665	Integrase core domain	rve
UHGV-0145535_39	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0145535_39	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0145535_39	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0145535_40	PHROG	phrog_750	NA	unknown function
UHGV-0145535_40	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0145535_40	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0145535_44	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0145535_44	UniRef90	UniRef90_A0A372UYJ5	XRE family transcriptional regulator	NA
UHGV-0145535_44	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0145535_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0145535_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0145535_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0145535_45	UniRef90	UniRef90_A0A372UYM9	LexA family transcriptional regulator	NA
UHGV-0145535_45	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-0145535_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145535_45	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0145535_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145535_45	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA