UHGV-0145686

Genome information

Genome length 24,401 bps

CDS count 42

Completeness 55.63% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145686
vOTU ID	vOTU-034703
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_423166
BioSample	NA
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.81
Jumbo phage	No

Genome content
Genome length	24,401 bps
GC content	54.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	88.68%
Average CDS length	518.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145686_1	UniRef90	UniRef90_U2AS96	MuF_C domain-containing protein	NA
UHGV-0145686_1	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0145686_2	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0145686_2	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0145686_4	PHROG	phrog_3754	NA	unknown function
UHGV-0145686_4	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0145686_5	PHROG	phrog_21718	NA	unknown function
UHGV-0145686_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0145686_6	PHROG	phrog_22984	NA	unknown function
UHGV-0145686_7	PHROG	phrog_16490	NA	unknown function
UHGV-0145686_7	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0145686_8	PHROG	phrog_20016	NA	unknown function
UHGV-0145686_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0145686_8	eggNOG-mapper	1485543.JMME01000025_gene2458	NA	NA
UHGV-0145686_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0145686_9	Structural annotation	PF12510	NA	NA
UHGV-0145686_10	KOfam	K14059	int; integrase	NA
UHGV-0145686_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0145686_10	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-0145686_10	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0145686_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0145686_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0145686_10	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0145686_11	eggNOG-mapper	246194.CHY_1699	Staphylococcal nuclease homologue	NA
UHGV-0145686_11	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0145686_12	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0145686_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0145686_12	UniRef90	UniRef90_UPI001921ACBC	XRE family transcriptional regulator	NA
UHGV-0145686_12	eggNOG-mapper	887929.HMP0721_0588	Cytoplasmic, score 8.87	NA
UHGV-0145686_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145686_12	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0145686_12	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0145686_12	Structural annotation	PF00717, PF01381, MF_00015, NF007621, NF041951, COG2932	NA	NA
UHGV-0145686_13	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-0145686_13	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0145686_13	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0145686_14	Structural annotation	PF03885	NA	NA
UHGV-0145686_16	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0145686_19	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0145686_19	PHROG	phrog_9562	NA	unknown function
UHGV-0145686_19	UniRef90	UniRef90_A0A6N3FDD3	Pentapeptide repeats (8 copies)	NA
UHGV-0145686_19	eggNOG-mapper	1232443.BAIA02000078_gene49	Pentapeptide repeat protein	NA
UHGV-0145686_19	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0145686_19	Pfam	PF19062	NA	DUF5758
UHGV-0145686_19	COG	COG1357	NA	NA
UHGV-0145686_19	Structural annotation	PF19062, PF13599, NF033086, COG1357	NA	NA
UHGV-0145686_20	eggNOG-mapper	537013.CLOSTMETH_01718	NA	NA
UHGV-0145686_21	Structural annotation	PF09943	NA	NA
UHGV-0145686_23	PHROG	phrog_862	NA	unknown function
UHGV-0145686_23	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0145686_23	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0145686_24	PHROG	phrog_15768	NA	unknown function
UHGV-0145686_24	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0145686_24	eggNOG-mapper	642492.Clole_0946	DnaD domain protein	NA
UHGV-0145686_24	Pfam	PF19808	NA	DUF6291
UHGV-0145686_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0145686_24	Structural annotation	PF19808	NA	NA
UHGV-0145686_25	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0145686_25	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0145686_25	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0145686_25	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0145686_25	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0145686_25	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0145686_25	COG	COG0305	Replicative DNA helicase	NA
UHGV-0145686_25	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0145686_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0145686_27	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0145686_27	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0145686_27	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0145686_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0145686_28	Structural annotation	PF12759	NA	NA
UHGV-0145686_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0145686_29	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0145686_29	UniRef90	UniRef90_UPI0018A8D167	DNA cytosine methyltransferase	NA
UHGV-0145686_29	eggNOG-mapper	903814.ELI_3130	C-5 cytosine-specific DNA methylase	NA
UHGV-0145686_29	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0145686_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0145686_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0145686_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0145686_30	UniRef90	UniRef90_UPI0018AB721E	Lar family restriction alleviation protein	NA
UHGV-0145686_30	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0145686_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0145686_31	Structural annotation	NF000937	NA	NA
UHGV-0145686_32	PHROG	phrog_38832	NA	unknown function
UHGV-0145686_32	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0145686_37	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145686_37	UniRef90	UniRef90_A0A6L8SWJ4	AP2 domain-containing protein	NA
UHGV-0145686_37	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0145686_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145686_38	UniRef90	UniRef90_UPI001899C2C3	helix-turn-helix domain-containing protein	NA
UHGV-0145686_38	eggNOG-mapper	1378168.N510_02302	Transcriptional	NA
UHGV-0145686_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145686_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145686_38	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0145686_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0145686_40	PHROG	phrog_4836	CII-like regulator	transcription regulation
UHGV-0145686_40	UniRef90	UniRef90_U2R0P8	DNA-binding helix-turn-helix protein	NA
UHGV-0145686_40	eggNOG-mapper	1226322.HMPREF1545_02890	Helix-turn-helix XRE-family like proteins	NA
UHGV-0145686_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145686_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0145686_42	AcrCatalog	cluster_2194	NA	NA