UHGV-0145773

Genome information

Genome length 29,475 bps

CDS count 45

Completeness 72.29% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145773
vOTU ID	vOTU-025617
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_397574
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.29% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	8.41
Jumbo phage	No

Genome content
Genome length	29,475 bps
GC content	48.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	90.09%
Average CDS length	595.87 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145773_2	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0145773_2	PHROG	phrog_24603	NA	unknown function
UHGV-0145773_2	UniRef90	UniRef90_A0A1C7G6X9	Spo0A_C domain-containing protein	NA
UHGV-0145773_2	eggNOG-mapper	411902.CLOBOL_06400	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0145773_2	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0145773_2	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0145773_3	UniRef90	UniRef90_UPI001D068B5A	C40 family peptidase	NA
UHGV-0145773_3	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0145773_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0145773_3	Structural annotation	PF19127, PF00877, NF033742, COG0791	NA	NA
UHGV-0145773_4	PHROG	phrog_199	holin	lysis
UHGV-0145773_4	UniRef90	UniRef90_A0A174MPL2	Toxin secretion/phage lysis holin	NA
UHGV-0145773_4	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-0145773_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0145773_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0145773_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0145773_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0145773_6	eggNOG-mapper	742733.HMPREF9469_00968	NA	NA
UHGV-0145773_7	UniRef90	UniRef90_UPI000C7AC03D	fibronectin type III domain-containing protein	NA
UHGV-0145773_7	eggNOG-mapper	742733.HMPREF9469_00967	NA	NA
UHGV-0145773_7	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0145773_7	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-0145773_8	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0145773_9	PHROG	phrog_18725	NA	unknown function
UHGV-0145773_9	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0145773_10	PHROG	phrog_13879	NA	unknown function
UHGV-0145773_10	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0145773_10	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0145773_11	PHROG	phrog_1194	NA	unknown function
UHGV-0145773_11	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0145773_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0145773_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0145773_12	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0145773_12	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0145773_12	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0145773_12	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0145773_13	PHROG	phrog_8355	NA	unknown function
UHGV-0145773_13	UniRef90	UniRef90_UPI001D07612A	bacteriophage Gp15 family protein	NA
UHGV-0145773_13	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0145773_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0145773_13	Structural annotation	PF06854	NA	NA
UHGV-0145773_14	PHROG	phrog_8300	NA	unknown function
UHGV-0145773_14	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0145773_15	PHROG	phrog_820	major tail protein	tail
UHGV-0145773_15	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0145773_15	COG	COG5492	NA	NA
UHGV-0145773_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0145773_16	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0145773_16	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0145773_16	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0145773_16	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0145773_16	Structural annotation	PF12691	NA	NA
UHGV-0145773_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0145773_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0145773_18	PHROG	phrog_8710	NA	unknown function
UHGV-0145773_18	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0145773_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0145773_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0145773_19	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0145773_20	PHROG	phrog_1378	NA	unknown function
UHGV-0145773_20	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0145773_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0145773_21	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0145773_21	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0145773_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0145773_22	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0145773_22	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0145773_23	PHROG	phrog_419	NA	unknown function
UHGV-0145773_23	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-0145773_23	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-0145773_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0145773_24	UniRef90	UniRef90_R5F6J4	PBECR2 domain-containing protein	NA
UHGV-0145773_24	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0145773_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0145773_24	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0145773_24	COG	COG2369	NA	NA
UHGV-0145773_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0145773_25	UniRef90	UniRef90_A0A1C7G7K7	Capsid protein	NA
UHGV-0145773_25	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0145773_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0145773_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145773_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0145773_26	UniRef90	UniRef90_A0A1C7G6C9	Terminase	NA
UHGV-0145773_26	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0145773_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145773_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0145773_27	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0145773_27	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0145773_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0145773_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0145773_27	Structural annotation	PF16677	NA	NA
UHGV-0145773_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0145773_28	eggNOG-mapper	1298920.KI911353_gene4858	NA	NA
UHGV-0145773_33	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0145773_33	PHROG	phrog_15982	NA	unknown function
UHGV-0145773_33	UniRef90	UniRef90_R0AR95	ParB domain-containing protein	NA
UHGV-0145773_33	eggNOG-mapper	641107.CDLVIII_1319	ParB-like nuclease domain	NA
UHGV-0145773_33	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0145773_33	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0145773_33	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0145773_34	PHROG	phrog_7566	NA	unknown function
UHGV-0145773_34	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0145773_34	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0145773_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0145773_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0145773_35	UniRef90	UniRef90_R0AP86	Chromosome partitioning protein	NA
UHGV-0145773_35	eggNOG-mapper	610130.Closa_0717	AAA domain	NA
UHGV-0145773_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-0145773_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0145773_35	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0145773_37	PHROG	phrog_664	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145773_37	UniRef90	UniRef90_UPI001C0266A3	helix-turn-helix domain-containing protein	NA
UHGV-0145773_37	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0145773_37	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0145773_37	Structural annotation	PF13384, PF08281, NF040595, COG2771	NA	NA
UHGV-0145773_42	UniRef90	UniRef90_A0A3R6SFF1	DNA-binding protein	NA
UHGV-0145773_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0145773_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145773_44	UniRef90	UniRef90_N9Z4J4	HTH cro/C1-type domain-containing protein	NA
UHGV-0145773_44	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0145773_44	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0145773_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145773_44	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA