UHGV-0145810

Genome information

Genome length 41,724 bps

CDS count 69

Completeness 80.89% (medium-quality)

geNomad score 0.9382

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145810
vOTU ID	vOTU-016227
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_434732
BioSample	SAMN06018974
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9382
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.48
Jumbo phage	No

Genome content
Genome length	41,724 bps
GC content	47.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	91.00%
Average CDS length	553.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145810_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0145810_1	UniRef90	UniRef90_A0A1Q6UF07	Bro-N domain-containing protein	NA
UHGV-0145810_1	eggNOG-mapper	1278971.AOGF01000115_gene2343	BRO family, N-terminal domain	NA
UHGV-0145810_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0145810_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0145810_1	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0145810_2	KOfam	K14059	int; integrase	NA
UHGV-0145810_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0145810_2	UniRef90	UniRef90_R6I414	Phage integrase family protein	NA
UHGV-0145810_2	eggNOG-mapper	935840.JAEQ01000006_gene2597	viral genome integration into host DNA	NA
UHGV-0145810_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0145810_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0145810_2	Structural annotation	PF00589, PF09003, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0145810_7	PHROG	phrog_98	NA	unknown function
UHGV-0145810_7	UniRef90	UniRef90_A0A510WSR5	YopX domain-containing protein	NA
UHGV-0145810_7	eggNOG-mapper	201846.B5SP14_9CAUD	YopX protein	NA
UHGV-0145810_7	Pfam	PF09643	YopX protein	YopX
UHGV-0145810_7	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0145810_7	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0145810_10	Structural annotation	PF11195	NA	NA
UHGV-0145810_12	COG	COG1357	NA	NA
UHGV-0145810_12	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0145810_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0145810_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0145810_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0145810_14	UniRef90	UniRef90_A0A1G9NLL5	ERF superfamily protein	NA
UHGV-0145810_14	eggNOG-mapper	1524881.A0A088CQ15_9CAUD	ERF superfamily	NA
UHGV-0145810_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0145810_14	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0145810_15	eggNOG-mapper	1121097.JCM15093_3614	NA	NA
UHGV-0145810_15	Pfam	PF07603	NA	DUF1566
UHGV-0145810_15	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0145810_17	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0145810_17	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0145810_18	eggNOG-mapper	326298.Suden_1337	NA	NA
UHGV-0145810_18	Structural annotation	PF09499, COG4998	NA	NA
UHGV-0145810_20	PHROG	phrog_87	metallo-protease	other
UHGV-0145810_20	UniRef90	UniRef90_A0A1Q6UEY0	Peptidase_M78 domain-containing protein	NA
UHGV-0145810_20	eggNOG-mapper	471854.Dfer_2449	Zn peptidase	NA
UHGV-0145810_20	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0145810_20	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0145810_20	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0145810_21	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0145810_21	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0145810_21	UniRef90	UniRef90_R6HUJ5	Putative prophage repressor	NA
UHGV-0145810_21	eggNOG-mapper	1088868.CIN_09800	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0145810_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145810_21	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0145810_21	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0145810_21	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0145810_22	COG	COG4223	NA	NA
UHGV-0145810_24	Structural annotation	PF04447	NA	NA
UHGV-0145810_26	PHROG	phrog_17247	NA	unknown function
UHGV-0145810_26	eggNOG-mapper	1410619.SRDD_42000	NA	NA
UHGV-0145810_26	Pfam	PF19808	NA	DUF6291
UHGV-0145810_26	COG	COG3756	NA	NA
UHGV-0145810_28	PHROG	phrog_6836	NA	unknown function
UHGV-0145810_28	Pfam	PF19889	NA	DUF6362
UHGV-0145810_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0145810_29	UniRef90	UniRef90_A0A1Q6UF07	Bro-N domain-containing protein	NA
UHGV-0145810_29	eggNOG-mapper	1217714.F975_02414	BRO family, N-terminal domain	NA
UHGV-0145810_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0145810_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0145810_32	Structural annotation	PF00210, MF_01441, NF006975, COG2406	NA	NA
UHGV-0145810_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0145810_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0145810_33	UniRef90	UniRef90_UPI00030D8FE5	terminase small subunit	NA
UHGV-0145810_33	eggNOG-mapper	1123508.JH636446_gene6124	DNA packaging	NA
UHGV-0145810_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0145810_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0145810_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0145810_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0145810_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0145810_34	UniRef90	UniRef90_A0A1M6MYR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0145810_34	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0145810_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0145810_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0145810_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0145810_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0145810_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0145810_35	KOfam	K09961	NA	NA
UHGV-0145810_35	PHROG	phrog_4660	minor head protein	head and packaging
UHGV-0145810_35	UniRef90	UniRef90_A0A225DU28	Phage-related protein	NA
UHGV-0145810_35	eggNOG-mapper	882378.RBRH_01212	NA	NA
UHGV-0145810_35	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0145810_35	Pfam	PF18825	Large polyvalent protein-associated domain 13	LPD13
UHGV-0145810_35	COG	COG3567	NA	NA
UHGV-0145810_36	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0145810_36	UniRef90	UniRef90_UPI0015E951FA	phage head morphogenesis protein	NA
UHGV-0145810_36	eggNOG-mapper	882378.RBRH_01211	Phage Mu protein F like protein	NA
UHGV-0145810_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0145810_36	COG	COG2369	NA	NA
UHGV-0145810_36	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0145810_37	KOfam	K09960	NA	NA
UHGV-0145810_37	PHROG	phrog_3778	head maturation protease	head and packaging
UHGV-0145810_37	UniRef90	UniRef90_A0A562X740	NA	NA
UHGV-0145810_37	eggNOG-mapper	882378.RBRH_01210	NA	NA
UHGV-0145810_37	Pfam	PF09979	NA	DUF2213
UHGV-0145810_37	COG	COG3566	NA	NA
UHGV-0145810_37	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0145810_38	PHROG	phrog_3645	virion structural protein	head and packaging
UHGV-0145810_38	eggNOG-mapper	882378.RBRH_01209	NA	NA
UHGV-0145810_38	Structural annotation	COG5471	NA	NA
UHGV-0145810_39	PHROG	phrog_264	major head protein	head and packaging
UHGV-0145810_39	UniRef90	UniRef90_UPI00036421A8	NA	NA
UHGV-0145810_39	eggNOG-mapper	882378.RBRH_01208	Protein conserved in bacteria	NA
UHGV-0145810_39	Pfam	PF09950	NA	DUF2184
UHGV-0145810_39	COG	COG4834	NA	NA
UHGV-0145810_39	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0145810_40	PHROG	phrog_3714	NA	unknown function
UHGV-0145810_40	UniRef90	UniRef90_H0F6T3	NA	NA
UHGV-0145810_40	eggNOG-mapper	742159.HMPREF0004_2580	NA	NA
UHGV-0145810_41	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0145810_41	UniRef90	UniRef90_UPI000D3EAED8	NA	NA
UHGV-0145810_41	eggNOG-mapper	82996.sch_09260	NA	NA
UHGV-0145810_41	Pfam	PF13262	NA	DUF4054
UHGV-0145810_41	Structural annotation	PF13262	NA	NA
UHGV-0145810_42	PHROG	phrog_222	tail protein	tail
UHGV-0145810_42	UniRef90	UniRef90_A0A2I7QSG8	Neck protein	NA
UHGV-0145810_42	eggNOG-mapper	551895.B5AX61_9CAUD	NA	NA
UHGV-0145810_43	PHROG	phrog_4475	head protein	head and packaging
UHGV-0145810_43	eggNOG-mapper	882378.RBRH_01204	NA	NA
UHGV-0145810_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0145810_44	PHROG	phrog_4414	NA	unknown function
UHGV-0145810_44	Structural annotation	PF09646	NA	NA
UHGV-0145810_45	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0145810_45	UniRef90	UniRef90_A0A2Z3I1Q4	NA	NA
UHGV-0145810_45	eggNOG-mapper	882378.RBRH_01202	NA	NA
UHGV-0145810_45	Pfam	PF11863	NA	DUF3383
UHGV-0145810_45	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0145810_46	PHROG	phrog_2420	tail fiber protein	tail
UHGV-0145810_46	UniRef90	UniRef90_Q2L2V6	Putative phage protein	NA
UHGV-0145810_46	eggNOG-mapper	882378.RBRH_01201	NA	NA
UHGV-0145810_46	Structural annotation	PF11681, TIGR01603, COG5437	NA	NA
UHGV-0145810_47	UniRef90	UniRef90_Q6IWV4	Gp15 E	NA
UHGV-0145810_47	eggNOG-mapper	1094558.ME5_01663	NA	NA
UHGV-0145810_47	Structural annotation	PF16462	NA	NA
UHGV-0145810_48	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0145810_48	UniRef90	UniRef90_A0A345MV29	Tail protein	NA
UHGV-0145810_48	eggNOG-mapper	546268.NEISUBOT_05178	COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM invasin domains)	NA
UHGV-0145810_48	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0145810_48	Structural annotation	PF18013, TIGR01760, COG4764	NA	NA
UHGV-0145810_49	PHROG	phrog_817	tail fiber protein	tail
UHGV-0145810_49	eggNOG-mapper	882378.RBRH_01198	NA	NA
UHGV-0145810_49	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0145810_50	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0145810_50	UniRef90	UniRef90_A0A225DB69	NA	NA
UHGV-0145810_50	eggNOG-mapper	882378.RBRH_01197	NA	NA
UHGV-0145810_51	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0145810_51	PHROG	phrog_10078	NA	unknown function
UHGV-0145810_51	UniRef90	UniRef90_E5Y245	Antitoxin	NA
UHGV-0145810_51	eggNOG-mapper	926560.KE387023_gene2304	toxin-antitoxin pair type II binding	NA
UHGV-0145810_51	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0145810_51	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0145810_51	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0145810_51	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0145810_52	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0145810_52	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0145810_52	UniRef90	UniRef90_B9L8I4	Putative mRNA interferase YoeB	NA
UHGV-0145810_52	eggNOG-mapper	598659.NAMH_0525	Txe YoeB family	NA
UHGV-0145810_52	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0145810_52	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0145810_52	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0145810_52	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0145810_53	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0145810_53	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0145810_54	UniRef90	UniRef90_A0A5B9N5M6	Gp138_N domain-containing protein	NA
UHGV-0145810_54	eggNOG-mapper	417280.A1Z003_9CAUD	NA	NA
UHGV-0145810_54	Pfam	PF18352	NA	Gp138_N
UHGV-0145810_54	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0145810_55	PHROG	phrog_120	baseplate protein	tail
UHGV-0145810_55	UniRef90	UniRef90_A0A225DI88	NA	NA
UHGV-0145810_55	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0145810_56	PHROG	phrog_6	baseplate protein	tail
UHGV-0145810_56	UniRef90	UniRef90_A0A225E126	Putative bacteriophage protein	NA
UHGV-0145810_56	eggNOG-mapper	500637.PROVRUST_06714	Baseplate J-like protein	NA
UHGV-0145810_56	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0145810_56	COG	COG3299	NA	NA
UHGV-0145810_56	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0145810_57	PHROG	phrog_587	structural protein	head and packaging
UHGV-0145810_57	UniRef90	UniRef90_UPI001E3826D1	NA	NA
UHGV-0145810_57	eggNOG-mapper	882378.RBRH_01192	NA	NA
UHGV-0145810_57	Pfam	PF11041	NA	DUF2612
UHGV-0145810_57	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0145810_58	PHROG	phrog_1396	tail fiber protein	tail
UHGV-0145810_58	UniRef90	UniRef90_A0A1C4BSP1	Phage Tail Collar Domain (Fragment)	NA
UHGV-0145810_58	eggNOG-mapper	1187128.I2GUG1_9CAUD	NA	NA
UHGV-0145810_62	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0145810_62	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0145810_62	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0145810_65	Structural annotation	PF16083, TIGR01594	NA	NA
UHGV-0145810_66	PHROG	phrog_873	endolysin	head and packaging
UHGV-0145810_66	UniRef90	UniRef90_A0A7C8CAP6	Structural protein	NA
UHGV-0145810_66	eggNOG-mapper	637910.ROD_26091	NA	NA