UHGV-0145859

Genome information

Genome length 28,424 bps

CDS count 46

Completeness 76.63% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145859
vOTU ID	vOTU-036283
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_437408
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.36
Jumbo phage	No

Genome content
Genome length	28,424 bps
GC content	48.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.94%
Average CDS length	576.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145859_3	eggNOG-mapper	888727.HMPREF9092_1332	NA	NA
UHGV-0145859_3	Structural annotation	PF03412, COG4990	NA	NA
UHGV-0145859_4	PHROG	phrog_199	holin	lysis
UHGV-0145859_4	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0145859_4	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0145859_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0145859_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0145859_6	PHROG	phrog_13589	NA	unknown function
UHGV-0145859_6	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0145859_7	PHROG	phrog_31538	NA	unknown function
UHGV-0145859_7	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0145859_8	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0145859_8	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0145859_9	PHROG	phrog_24267	NA	unknown function
UHGV-0145859_9	UniRef90	UniRef90_A0A516LG32	Putative baseplate wedge protein	NA
UHGV-0145859_9	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0145859_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0145859_9	Structural annotation	COG4675	NA	NA
UHGV-0145859_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0145859_10	UniRef90	UniRef90_UPI001C107BE4	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0145859_10	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0145859_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0145859_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0145859_11	UniRef90	UniRef90_UPI001C0FE9F8	phage tail family protein	NA
UHGV-0145859_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0145859_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0145859_12	UniRef90	UniRef90_A0A316Q0J4	PblA	NA
UHGV-0145859_12	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0145859_12	COG	COG1511	NA	NA
UHGV-0145859_12	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0145859_13	PHROG	phrog_1633	NA	unknown function
UHGV-0145859_13	UniRef90	UniRef90_A0A847L140	NA	NA
UHGV-0145859_13	eggNOG-mapper	1321372.AQQB01000060_gene71	NA	NA
UHGV-0145859_13	Pfam	PF17318	NA	DUF5361
UHGV-0145859_13	Structural annotation	PF17318	NA	NA
UHGV-0145859_14	PHROG	phrog_1526	NA	unknown function
UHGV-0145859_14	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0145859_15	PHROG	phrog_117	major tail protein	tail
UHGV-0145859_15	UniRef90	UniRef90_A0A356C4M0	Phage tail protein	NA
UHGV-0145859_15	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0145859_15	COG	COG5492	NA	NA
UHGV-0145859_15	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0145859_16	PHROG	phrog_123	tail terminator	connector
UHGV-0145859_16	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0145859_16	Structural annotation	PF06141	NA	NA
UHGV-0145859_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0145859_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0145859_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0145859_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0145859_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0145859_18	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0145859_18	Pfam	PF09355	NA	Phage_Gp19
UHGV-0145859_18	Structural annotation	PF09355	NA	NA
UHGV-0145859_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0145859_19	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0145859_19	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0145859_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0145859_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0145859_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0145859_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0145859_20	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0145859_20	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-0145859_20	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0145859_20	Structural annotation	PF14265	NA	NA
UHGV-0145859_21	PHROG	phrog_3675	NA	unknown function
UHGV-0145859_21	UniRef90	UniRef90_E7FP13	YjcQ protein	NA
UHGV-0145859_21	eggNOG-mapper	713605.ADHG01000003_gene720	YjcQ protein	NA
UHGV-0145859_21	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0145859_21	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0145859_23	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0145859_23	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0145859_23	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0145859_23	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0145859_23	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0145859_23	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0145859_23	Structural annotation	PF03496, MF_04139, NF040688	NA	NA
UHGV-0145859_24	PHROG	phrog_104	portal protein	head and packaging
UHGV-0145859_24	UniRef90	UniRef90_A0A6N8H2B6	Phage portal protein	NA
UHGV-0145859_24	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0145859_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0145859_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0145859_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0145859_25	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0145859_25	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-0145859_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0145859_25	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0145859_26	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0145859_26	Structural annotation	PF19962	NA	NA
UHGV-0145859_27	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145859_27	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0145859_27	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0145859_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0145859_27	Structural annotation	PF01844	NA	NA
UHGV-0145859_28	eggNOG-mapper	1121447.JONL01000001_gene735	NA	NA
UHGV-0145859_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0145859_29	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0145859_29	eggNOG-mapper	1235800.C819_03979	NA	NA
UHGV-0145859_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0145859_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0145859_30	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0145859_30	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0145859_34	PHROG	phrog_16304	NA	unknown function
UHGV-0145859_34	UniRef90	UniRef90_UPI000F04C094	NA	NA
UHGV-0145859_34	Pfam	PF19808	NA	DUF6291
UHGV-0145859_34	Structural annotation	PF19808	NA	NA
UHGV-0145859_35	PHROG	phrog_1029	NA	unknown function
UHGV-0145859_35	eggNOG-mapper	1211817.CCAT010000049_gene2467	NA	NA
UHGV-0145859_35	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0145859_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0145859_36	UniRef90	UniRef90_UPI001CBF2F6A	replication terminator protein	NA
UHGV-0145859_36	eggNOG-mapper	120574.Q94M63_9CAUD	NA	NA
UHGV-0145859_37	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0145859_37	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0145859_37	UniRef90	UniRef90_UPI001D0E92C3	MBL fold metallo-hydrolase	NA
UHGV-0145859_37	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0145859_37	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0145859_37	dbAPIS	APIS062	NA	NA
UHGV-0145859_37	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0145859_37	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0145859_38	PHROG	phrog_862	NA	unknown function
UHGV-0145859_38	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0145859_38	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0145859_39	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0145859_39	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145859_39	UniRef90	UniRef90_UPI001C3ABD54	AAA family ATPase	NA
UHGV-0145859_39	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0145859_39	Pfam	PF13476	AAA domain	AAA_23
UHGV-0145859_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0145859_39	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0145859_43	UniRef90	UniRef90_UPI001C0FDD58	helix-turn-helix domain-containing protein	NA
UHGV-0145859_43	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0145859_43	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0145859_43	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0145859_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0145859_44	UniRef90	UniRef90_A0A4R3Z8I3	BRO family protein	NA
UHGV-0145859_44	eggNOG-mapper	1203606.HMPREF1526_01124	BRO family, N-terminal domain	NA
UHGV-0145859_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0145859_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145859_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0145859_44	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA