UHGV-0145916

Genome information

Genome length 32,616 bps

CDS count 64

Completeness 55.52% (medium-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0145916
vOTU ID	vOTU-025476
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_407289
BioSample	SAMN05414977
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.52% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23
Jumbo phage	No

Genome content
Genome length	32,616 bps
GC content	40.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.89%
Average CDS length	467.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0145916_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0145916_2	UniRef90	UniRef90_R6ZMD8	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0145916_2	eggNOG-mapper	1027396.LMOSA_21110	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0145916_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0145916_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145916_2	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0145916_3	UniRef90	UniRef90_A0A174J2F0	HTH cro/C1-type domain-containing protein	NA
UHGV-0145916_3	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0145916_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0145916_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0145916_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0145916_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0145916_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0145916_6	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-0145916_6	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0145916_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0145916_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0145916_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0145916_6	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0145916_7	PHROG	phrog_4433	NA	unknown function
UHGV-0145916_7	eggNOG-mapper	886882.PPSC2_p0048	regulation of DNA-templated transcription, elongation	NA
UHGV-0145916_7	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0145916_7	Structural annotation	NF007410	NA	NA
UHGV-0145916_8	PHROG	phrog_4292	NA	unknown function
UHGV-0145916_8	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-0145916_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0145916_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145916_11	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0145916_11	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0145916_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0145916_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0145916_12	Structural annotation	PF18129, MF_00613, NF002745, COG2139	NA	NA
UHGV-0145916_13	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0145916_13	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-0145916_13	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0145916_13	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0145916_14	PHROG	phrog_25456	NA	unknown function
UHGV-0145916_15	eggNOG-mapper	1304866.K413DRAFT_4695	NA	NA
UHGV-0145916_15	Structural annotation	NF010673	NA	NA
UHGV-0145916_16	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0145916_16	UniRef90	UniRef90_UPI001D013072	HNH endonuclease	NA
UHGV-0145916_16	eggNOG-mapper	1298920.KI911353_gene4861	HNH endonuclease	NA
UHGV-0145916_16	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0145916_16	Structural annotation	PF13392	NA	NA
UHGV-0145916_17	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0145916_17	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0145916_17	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0145916_17	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0145916_17	dbAPIS	APIS058	NA	NA
UHGV-0145916_17	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0145916_17	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0145916_18	PHROG	phrog_7839	NA	unknown function
UHGV-0145916_18	UniRef90	UniRef90_A0A413HUB9	NA	NA
UHGV-0145916_18	eggNOG-mapper	1410650.JHWL01000003_gene2844	NA	NA
UHGV-0145916_19	PHROG	phrog_8684	NA	unknown function
UHGV-0145916_19	Pfam	PF09643	YopX protein	YopX
UHGV-0145916_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0145916_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0145916_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0145916_20	UniRef90	UniRef90_A0A373Z0M6	Single-stranded DNA-binding protein	NA
UHGV-0145916_20	eggNOG-mapper	411489.CLOL250_00507	Single-stranded DNA-binding protein	NA
UHGV-0145916_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0145916_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0145916_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0145916_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0145916_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0145916_22	PHROG	phrog_19106	NA	unknown function
UHGV-0145916_22	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0145916_22	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0145916_22	Structural annotation	TIGR01453	NA	NA
UHGV-0145916_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0145916_24	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0145916_24	UniRef90	UniRef90_F7JKD7	Methyltransferase	NA
UHGV-0145916_24	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0145916_24	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0145916_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0145916_24	COG	COG0863	DNA modification methylase	NA
UHGV-0145916_24	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0145916_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0145916_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0145916_25	UniRef90	UniRef90_UPI001C035897	DNA cytosine methyltransferase	NA
UHGV-0145916_25	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0145916_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0145916_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0145916_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0145916_25	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0145916_27	PHROG	phrog_17690	NA	unknown function
UHGV-0145916_27	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0145916_27	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0145916_28	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0145916_28	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0145916_28	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0145916_28	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0145916_28	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0145916_31	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0145916_31	UniRef90	UniRef90_UPI001E517B3D	helix-turn-helix domain-containing protein	NA
UHGV-0145916_31	eggNOG-mapper	1121947.AUHK01000002_gene919	DnaD domain protein	NA
UHGV-0145916_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0145916_31	Structural annotation	PF20024, MF_01819, NF040642, COG0640	NA	NA
UHGV-0145916_32	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0145916_34	PHROG	phrog_8684	NA	unknown function
UHGV-0145916_34	UniRef90	UniRef90_A0A3R7C0X3	YopX domain-containing protein	NA
UHGV-0145916_34	eggNOG-mapper	1235794.C811_01545	NA	NA
UHGV-0145916_34	Pfam	PF09643	YopX protein	YopX
UHGV-0145916_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0145916_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0145916_35	PHROG	phrog_874	NA	unknown function
UHGV-0145916_35	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0145916_35	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0145916_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0145916_36	PHROG	phrog_10714	NA	unknown function
UHGV-0145916_36	UniRef90	UniRef90_R5GX78	DNA polymerase II large subunit	NA
UHGV-0145916_36	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0145916_37	PHROG	phrog_20593	NA	unknown function
UHGV-0145916_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0145916_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0145916_39	UniRef90	UniRef90_UPI00189B8515	ATP-binding protein	NA
UHGV-0145916_39	eggNOG-mapper	1304880.JAGB01000002_gene2233	PFAM IstB-like ATP binding protein	NA
UHGV-0145916_39	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0145916_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0145916_39	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0145916_40	PHROG	phrog_1578	NA	unknown function
UHGV-0145916_40	eggNOG-mapper	867696.E1XTF6_BPSAV	NA	NA
UHGV-0145916_42	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0145916_42	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0145916_42	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0145916_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0145916_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0145916_44	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0145916_44	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0145916_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0145916_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0145916_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0145916_44	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0145916_46	PHROG	phrog_21718	NA	unknown function
UHGV-0145916_46	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0145916_46	Structural annotation	NF033819	NA	NA
UHGV-0145916_48	PHROG	phrog_16490	NA	unknown function
UHGV-0145916_48	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0145916_50	PHROG	phrog_20016	NA	unknown function
UHGV-0145916_50	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0145916_50	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0145916_50	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0145916_51	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0145916_52	PHROG	phrog_1233	NA	unknown function
UHGV-0145916_52	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0145916_54	Structural annotation	PF10944	NA	NA
UHGV-0145916_55	Structural annotation	PF04347	NA	NA
UHGV-0145916_56	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-0145916_56	Structural annotation	PF18267	NA	NA
UHGV-0145916_64	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0145916_64	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0145916_64	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA