UHGV-0146037

Genome information

Genome length 43,988 bps

CDS count 68

Completeness 99.90% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146037
vOTU ID	vOTU-060434
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_429928
BioSample	SAMN05545079
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.8
Jumbo phage	No

Genome content
Genome length	43,988 bps
GC content	46.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.65%
Average CDS length	591.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146037_1	eggNOG-mapper	411902.CLOBOL_05639	NA	NA
UHGV-0146037_2	KOfam	K14059	int; integrase	NA
UHGV-0146037_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0146037_2	UniRef90	UniRef90_A0A413VL55	Site-specific integrase	NA
UHGV-0146037_2	eggNOG-mapper	926561.KB900620_gene2889	Belongs to the 'phage' integrase family	NA
UHGV-0146037_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146037_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146037_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146037_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0146037_4	UniRef90	UniRef90_A0A414AP55	XRE family transcriptional regulator	NA
UHGV-0146037_4	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0146037_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0146037_4	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0146037_7	KOfam	K20742	ykfC; gamma-D-glutamyl-L-lysine dipeptidyl-peptidase [EC:3.4.14.13]	NA
UHGV-0146037_7	PHROG	phrog_38078	NA	unknown function
UHGV-0146037_7	UniRef90	UniRef90_A0A3A6I3E4	Cell wall-binding protein	NA
UHGV-0146037_7	eggNOG-mapper	1304866.K413DRAFT_1245	Putative cell wall binding repeat	NA
UHGV-0146037_7	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0146037_7	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0146037_7	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0146037_7	Structural annotation	PF19127, PF00877, NF008096, TIGR04035, COG0791	NA	NA
UHGV-0146037_9	PHROG	phrog_199	holin	lysis
UHGV-0146037_9	UniRef90	UniRef90_R0BUQ7	Toxin secretion/phage lysis holin	NA
UHGV-0146037_9	eggNOG-mapper	411902.CLOBOL_05644	Bacteriophage holin family	NA
UHGV-0146037_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0146037_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0146037_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0146037_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0146037_10	UniRef90	UniRef90_UPI0008D31B67	acyltransferase	NA
UHGV-0146037_10	eggNOG-mapper	1262449.CP6013_0798	Acyltransferase family	NA
UHGV-0146037_10	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0146037_10	COG	COG3274	Surface polysaccharide O-acyltransferase WecH	NA
UHGV-0146037_10	Structural annotation	PF01757, MF_01949, NF000033, COG3274	NA	NA
UHGV-0146037_11	Structural annotation	PF17642, MF_01370, COG5437	NA	NA
UHGV-0146037_14	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-0146037_15	PHROG	phrog_521	tail protein	tail
UHGV-0146037_15	UniRef90	UniRef90_A0A395YGL1	NA	NA
UHGV-0146037_15	eggNOG-mapper	931276.Cspa_c07900	NA	NA
UHGV-0146037_15	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0146037_15	COG	COG3778	NA	NA
UHGV-0146037_15	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0146037_16	PHROG	phrog_13589	NA	unknown function
UHGV-0146037_16	UniRef90	UniRef90_U5MXZ9	PI-PLC Y-box domain-containing protein	NA
UHGV-0146037_16	eggNOG-mapper	931276.Cspa_c07890	NA	NA
UHGV-0146037_17	PHROG	phrog_6	baseplate protein	tail
UHGV-0146037_17	UniRef90	UniRef90_A0A0E2HGV8	Baseplate_J domain-containing protein	NA
UHGV-0146037_17	eggNOG-mapper	1352230.S6AVU3_9CAUD	Baseplate J-like protein	NA
UHGV-0146037_17	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0146037_17	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0146037_18	PHROG	phrog_120	baseplate protein	tail
UHGV-0146037_18	UniRef90	UniRef90_UPI0013F65658	NA	NA
UHGV-0146037_18	eggNOG-mapper	1163671.JAGI01000002_gene3046	NA	NA
UHGV-0146037_18	Pfam	PF10934	NA	DUF2634
UHGV-0146037_18	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0146037_19	PHROG	phrog_579	NA	unknown function
UHGV-0146037_19	UniRef90	UniRef90_UPI0013F5FFEE	NA	NA
UHGV-0146037_19	eggNOG-mapper	756499.Desde_1339	NA	NA
UHGV-0146037_19	Pfam	PF10844	NA	DUF2577
UHGV-0146037_19	Structural annotation	PF10844	NA	NA
UHGV-0146037_20	PHROG	phrog_400	tail protein	tail
UHGV-0146037_20	eggNOG-mapper	1163671.JAGI01000002_gene3048	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0146037_20	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0146037_20	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0146037_21	PHROG	phrog_380	endolysin	lysis
UHGV-0146037_21	eggNOG-mapper	1163671.JAGI01000002_gene3049	positive regulation of growth rate	NA
UHGV-0146037_21	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0146037_21	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0146037_22	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0146037_22	UniRef90	UniRef90_A0A413W4L2	TMP_3 domain-containing protein	NA
UHGV-0146037_22	eggNOG-mapper	1163671.JAGI01000002_gene3050	tape measure	NA
UHGV-0146037_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0146037_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0146037_22	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0146037_22	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0146037_23	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0146037_23	UniRef90	UniRef90_D4MPQ8	Phage XkdN-like protein	NA
UHGV-0146037_23	eggNOG-mapper	1163671.JAGI01000002_gene3052	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0146037_23	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0146037_23	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0146037_24	PHROG	phrog_365	tail protein	tail
UHGV-0146037_24	UniRef90	UniRef90_UPI001177916C	phage tail tube protein	NA
UHGV-0146037_24	eggNOG-mapper	1163671.JAGI01000002_gene3053	Phage tail tube protein	NA
UHGV-0146037_24	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0146037_24	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0146037_25	PHROG	phrog_279	tail sheath	tail
UHGV-0146037_25	UniRef90	UniRef90_A0A354IBY0	Phage tail sheath protein	NA
UHGV-0146037_25	eggNOG-mapper	1163671.JAGI01000002_gene3054	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0146037_25	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0146037_25	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0146037_25	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0146037_25	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0146037_27	PHROG	phrog_525	NA	unknown function
UHGV-0146037_27	Pfam	PF20765	NA	DUF6838
UHGV-0146037_27	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0146037_28	UniRef90	UniRef90_A0A3R6P0J4	HK97 gp10 family phage protein	NA
UHGV-0146037_28	eggNOG-mapper	398512.JQKC01000053_gene2530	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0146037_28	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0146037_29	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0146037_29	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0146037_30	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0146037_30	UniRef90	UniRef90_A0A413W4S0	NA	NA
UHGV-0146037_30	eggNOG-mapper	742738.HMPREF9460_02517	NA	NA
UHGV-0146037_30	Pfam	PF13262	NA	DUF4054
UHGV-0146037_30	Structural annotation	PF13262	NA	NA
UHGV-0146037_32	PHROG	phrog_264	major head protein	head and packaging
UHGV-0146037_32	UniRef90	UniRef90_A0A413W4M3	NA	NA
UHGV-0146037_32	eggNOG-mapper	742738.HMPREF9460_02515	NA	NA
UHGV-0146037_32	Pfam	PF09950	NA	DUF2184
UHGV-0146037_32	COG	COG4834	NA	NA
UHGV-0146037_32	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0146037_33	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0146037_33	eggNOG-mapper	742738.HMPREF9460_02514	NA	NA
UHGV-0146037_33	Structural annotation	PF09956	NA	NA
UHGV-0146037_34	KOfam	K09960	NA	NA
UHGV-0146037_34	PHROG	phrog_16985	NA	unknown function
UHGV-0146037_34	UniRef90	UniRef90_A0A413W4N3	NA	NA
UHGV-0146037_34	eggNOG-mapper	1196322.A370_02033	NA	NA
UHGV-0146037_34	Pfam	PF09979	NA	DUF2213
UHGV-0146037_34	COG	COG3566	NA	NA
UHGV-0146037_34	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0146037_35	eggNOG-mapper	268407.PWYN_15665	NA	NA
UHGV-0146037_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146037_36	UniRef90	UniRef90_UPI0013F5F3C6	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0146037_36	eggNOG-mapper	742738.HMPREF9460_02508	Portal protein	NA
UHGV-0146037_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146037_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0146037_37	KOfam	K09961	NA	NA
UHGV-0146037_37	PHROG	phrog_146	portal protein	head and packaging
UHGV-0146037_37	UniRef90	UniRef90_A0A0E2HGX6	HI1409 family phage-associated protein	NA
UHGV-0146037_37	eggNOG-mapper	1007096.BAGW01000022_gene2656	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0146037_37	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0146037_37	NCBIFam	TIGR01555.1	phage-associated protein, HI1409 family	NA
UHGV-0146037_37	COG	COG3567	NA	NA
UHGV-0146037_37	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0146037_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146037_38	PHROG	phrog_10250	NA	unknown function
UHGV-0146037_38	UniRef90	UniRef90_A0A413W4K1	PBSX family phage terminase large subunit	NA
UHGV-0146037_38	eggNOG-mapper	1211817.CCAT010000003_gene241	phage terminase, large subunit, PBSX family	NA
UHGV-0146037_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0146037_38	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0146037_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146037_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146037_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0146037_39	PHROG	phrog_2412	NA	unknown function
UHGV-0146037_39	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0146037_39	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0146037_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146037_40	UniRef90	UniRef90_A0A413W4T4	RNA polymerase subunit sigma-70	NA
UHGV-0146037_40	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0146037_40	Structural annotation	PF02996	NA	NA
UHGV-0146037_42	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0146037_45	eggNOG-mapper	411902.CLOBOL_05681	NA	NA
UHGV-0146037_46	UniRef90	UniRef90_A0A7X5ZIY7	KTSC domain-containing protein	NA
UHGV-0146037_46	eggNOG-mapper	55207.KP22_03880	NA	NA
UHGV-0146037_48	PHROG	phrog_15077	NA	unknown function
UHGV-0146037_48	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0146037_48	Structural annotation	NF038070	NA	NA
UHGV-0146037_49	PHROG	phrog_3502	NA	unknown function
UHGV-0146037_49	UniRef90	UniRef90_A0A3E2WBV3	LexA_DNA_bind domain-containing protein	NA
UHGV-0146037_49	eggNOG-mapper	411902.CLOBOL_05676	LexA DNA binding domain	NA
UHGV-0146037_49	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0146037_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146037_50	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146037_50	UniRef90	UniRef90_UPI001F43050B	NA	NA
UHGV-0146037_50	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-0146037_50	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0146037_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0146037_50	Structural annotation	PF14297	NA	NA
UHGV-0146037_51	PHROG	phrog_1029	NA	unknown function
UHGV-0146037_51	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0146037_51	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0146037_51	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0146037_52	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0146037_52	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0146037_52	eggNOG-mapper	411483.FAEPRAA2165_01886	NA	NA
UHGV-0146037_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0146037_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146037_53	UniRef90	UniRef90_A0A413W4Q6	Recombinase	NA
UHGV-0146037_53	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0146037_53	Pfam	PF03837	RecT family	RecT
UHGV-0146037_53	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0146037_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0146037_53	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0146037_54	PHROG	phrog_674	NA	unknown function
UHGV-0146037_54	UniRef90	UniRef90_A0A413W4U2	NA	NA
UHGV-0146037_54	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0146037_54	Pfam	PF07083	NA	DUF1351
UHGV-0146037_54	Structural annotation	PF07083	NA	NA
UHGV-0146037_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146037_56	UniRef90	UniRef90_A0A412YTC0	Recombinase	NA
UHGV-0146037_56	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0146037_56	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0146037_56	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0146037_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0146037_56	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0146037_63	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0146037_65	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146037_65	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146037_65	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0146037_65	eggNOG-mapper	1321784.HMPREF1987_01097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146037_65	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0146037_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146037_65	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146037_65	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0146037_66	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146037_66	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146037_66	UniRef90	UniRef90_UPI001EDF076D	repressor LexA	NA
UHGV-0146037_66	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0146037_66	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146037_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146037_66	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0146037_68	KOfam	K14059	int; integrase	NA
UHGV-0146037_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0146037_68	UniRef90	UniRef90_A0A0E2HP00	Tyr recombinase domain-containing protein	NA
UHGV-0146037_68	eggNOG-mapper	742733.HMPREF9469_05096	Belongs to the 'phage' integrase family	NA
UHGV-0146037_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146037_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146037_68	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA