UHGV-0146050

Genome information

Genome length 29,602 bps

CDS count 42

Completeness 66.78% (medium-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146050
vOTU ID	vOTU-037484
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_415933
BioSample	SAMN05414891
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.08
Jumbo phage	No

Genome content
Genome length	29,602 bps
GC content	50.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	93.06%
Average CDS length	659.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146050_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0146050_1	UniRef90	UniRef90_UPI000CF99656	phage tail protein	NA
UHGV-0146050_1	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0146050_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0146050_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0146050_1	COG	COG4926	Phage-related protein	NA
UHGV-0146050_1	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0146050_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0146050_2	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0146050_2	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0146050_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146050_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0146050_3	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0146050_3	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0146050_3	eggNOG-mapper	1230342.CTM_17027	tape measure	NA
UHGV-0146050_3	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0146050_3	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0146050_4	Structural annotation	PF11836	NA	NA
UHGV-0146050_5	PHROG	phrog_88	major tail protein	tail
UHGV-0146050_5	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0146050_5	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0146050_5	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0146050_5	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0146050_6	PHROG	phrog_78	tail terminator	connector
UHGV-0146050_6	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0146050_6	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0146050_7	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0146050_7	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0146050_7	Structural annotation	TIGR01725	NA	NA
UHGV-0146050_8	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0146050_8	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0146050_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0146050_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0146050_9	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0146050_9	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0146050_9	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0146050_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0146050_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0146050_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0146050_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0146050_10	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0146050_10	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0146050_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146050_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146050_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0146050_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146050_11	PHROG	phrog_16951	NA	unknown function
UHGV-0146050_11	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0146050_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0146050_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0146050_12	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0146050_12	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0146050_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0146050_12	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0146050_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0146050_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0146050_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0146050_13	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0146050_13	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0146050_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0146050_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0146050_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146050_13	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0146050_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0146050_14	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0146050_14	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0146050_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0146050_14	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0146050_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0146050_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0146050_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146050_15	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0146050_15	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0146050_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146050_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146050_15	Structural annotation	PF05766	NA	NA
UHGV-0146050_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146050_16	PHROG	phrog_12862	NA	unknown function
UHGV-0146050_16	UniRef90	UniRef90_UPI001F335D3E	ferrichrome ABC transporter ATP-binding protein	NA
UHGV-0146050_16	eggNOG-mapper	665956.HMPREF1032_03611	DNA methylase	NA
UHGV-0146050_16	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0146050_16	COG	COG0863	DNA modification methylase	NA
UHGV-0146050_17	PHROG	phrog_11237	NA	unknown function
UHGV-0146050_17	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0146050_17	Structural annotation	TIGR01636	NA	NA
UHGV-0146050_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146050_20	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0146050_22	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0146050_22	UniRef90	UniRef90_S1N930	Phage replication initiation protein	NA
UHGV-0146050_22	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0146050_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0146050_22	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0146050_23	PHROG	phrog_2113	NA	unknown function
UHGV-0146050_23	UniRef90	UniRef90_A0A832PDJ8	DNA replication protein	NA
UHGV-0146050_23	eggNOG-mapper	871968.DESME_09725	NA	NA
UHGV-0146050_23	Structural annotation	PF21715	NA	NA
UHGV-0146050_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146050_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146050_24	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0146050_24	eggNOG-mapper	1507.HMPREF0262_00434	Single-stranded DNA-binding protein	NA
UHGV-0146050_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146050_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146050_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146050_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146050_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0146050_26	PHROG	phrog_7566	NA	unknown function
UHGV-0146050_26	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0146050_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0146050_27	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0146050_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0146050_27	Structural annotation	PF05772	NA	NA
UHGV-0146050_28	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146050_28	UniRef90	UniRef90_A0A843HUJ5	NA	NA
UHGV-0146050_28	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0146050_28	Pfam	PF06378	NA	DUF1071
UHGV-0146050_28	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0146050_30	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0146050_30	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0146050_30	UniRef90	UniRef90_R6EQX1	Beta sliding clamp	NA
UHGV-0146050_30	eggNOG-mapper	1105031.HMPREF1141_2306	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0146050_30	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0146050_30	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0146050_30	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0146050_30	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0146050_30	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0146050_30	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0146050_31	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0146050_31	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0146050_31	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0146050_31	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0146050_31	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-0146050_32	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0146050_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0146050_32	UniRef90	UniRef90_A0A316L965	DNA methylase N-4	NA
UHGV-0146050_32	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0146050_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0146050_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0146050_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146050_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0146050_32	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0146050_36	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146050_36	PHROG	phrog_18750	NA	unknown function
UHGV-0146050_36	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0146050_36	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0146050_36	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0146050_36	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0146050_36	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0146050_38	PHROG	phrog_6058	NA	unknown function
UHGV-0146050_38	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0146050_39	UniRef90	UniRef90_R6I666	Putative cro repressor	NA
UHGV-0146050_39	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0146050_39	Pfam	PF05339	NA	DUF739
UHGV-0146050_39	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0146050_39	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0146050_40	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146050_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146050_40	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-0146050_40	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0146050_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146050_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146050_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146050_40	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0146050_42	KOfam	K14059	int; integrase	NA
UHGV-0146050_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0146050_42	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0146050_42	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0146050_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146050_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0146050_42	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA