UHGV-0146089

Genome information

Genome length 12,325 bps

CDS count 18

Completeness 99.90% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146089
vOTU ID	vOTU-011581
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399110
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.46
Jumbo phage	No

Genome content
Genome length	12,325 bps
GC content	38.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	87.85%
Average CDS length	602.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146089_1	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0146089_1	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0146089_1	UniRef90	UniRef90_UPI00195E16D6	ParA family protein	NA
UHGV-0146089_1	eggNOG-mapper	1347393.HG726024_gene3040	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0146089_1	Pfam	PF13614	AAA domain	AAA_31
UHGV-0146089_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0146089_1	Structural annotation	PF13614, MF_00533, NF041546, COG1192	NA	NA
UHGV-0146089_3	PHROG	phrog_1840	excisionase	integration and excision
UHGV-0146089_3	eggNOG-mapper	1300150.EMQU_1667	Helix-turn-helix domain	NA
UHGV-0146089_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0146089_3	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0146089_4	Structural annotation	PF06504, COG5527	NA	NA
UHGV-0146089_5	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0146089_5	eggNOG-mapper	720554.Clocl_3734	DNA primase activity	NA
UHGV-0146089_5	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0146089_5	Structural annotation	PF09250, COG4983	NA	NA
UHGV-0146089_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-0146089_6	UniRef90	UniRef90_R6GPW0	HK97 family phage portal protein	NA
UHGV-0146089_6	eggNOG-mapper	1089548.KI783301_gene3227	Phage portal protein	NA
UHGV-0146089_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0146089_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0146089_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0146089_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0146089_7	PHROG	phrog_4973	NA	unknown function
UHGV-0146089_7	UniRef90	UniRef90_A0A843HM15	Helix-turn-helix domain-containing protein	NA
UHGV-0146089_7	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0146089_7	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0146089_8	KOfam	K06904	NA	NA
UHGV-0146089_8	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0146089_8	UniRef90	UniRef90_R5EM65	HK97 family phage prohead protease	NA
UHGV-0146089_8	eggNOG-mapper	1089548.KI783301_gene3225	Caudovirus prohead serine protease	NA
UHGV-0146089_8	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0146089_8	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0146089_8	COG	COG3740	Phage head maturation protease	NA
UHGV-0146089_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0146089_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0146089_9	UniRef90	UniRef90_UPI001414F136	phage major capsid protein	NA
UHGV-0146089_9	eggNOG-mapper	1297617.JPJD01000009_gene2879	Phage capsid family	NA
UHGV-0146089_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146089_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146089_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0146089_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146089_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0146089_10	UniRef90	UniRef90_UPI0017482B2D	head-tail connector protein	NA
UHGV-0146089_10	eggNOG-mapper	1234664.AMRO01000024_gene1810	Phage gp6-like head-tail connector protein	NA
UHGV-0146089_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0146089_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0146089_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0146089_11	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0146089_11	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146089_11	UniRef90	UniRef90_J8BLQ5	HNH domain-containing protein	NA
UHGV-0146089_11	eggNOG-mapper	500633.CLOHIR_00362	HNH endonuclease	NA
UHGV-0146089_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146089_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146089_12	PHROG	phrog_1066	NA	unknown function
UHGV-0146089_12	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0146089_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0146089_13	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0146089_13	UniRef90	UniRef90_A0A151ATM3	Phage terminase	NA
UHGV-0146089_13	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0146089_13	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0146089_13	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0146089_13	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146089_13	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0146089_14	UniRef90	UniRef90_A0A1V5RVP9	Phage head-tail joining protein	NA
UHGV-0146089_14	eggNOG-mapper	457415.HMPREF1006_01810	Phage head-tail joining protein	NA
UHGV-0146089_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0146089_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0146089_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0146089_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0146089_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0146089_18	UniRef90	UniRef90_UPI001E437CDC	ParA family protein	NA
UHGV-0146089_18	eggNOG-mapper	190486.XAC3905	chromosome partitioning	NA
UHGV-0146089_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0146089_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA