UHGV-0146120

Genome information

Genome length 27,958 bps

CDS count 35

Completeness 83.84% (medium-quality)

geNomad score 0.9643

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146120
vOTU ID	vOTU-036197
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_422372
BioSample	SAMN05826917
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9643
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.55
Jumbo phage	No

Genome content
Genome length	27,958 bps
GC content	36.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	92.96%
Average CDS length	745.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146120_1	UniRef90	UniRef90_A0A8I1FDX7	Cell division protein	NA
UHGV-0146120_1	eggNOG-mapper	945021.TEH_16160	Bacterial membrane protein, YfhO	NA
UHGV-0146120_1	COG	COG4485	NA	NA
UHGV-0146120_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146120_2	UniRef90	UniRef90_A0A7M3EIZ6	Peptidase_S24 domain-containing protein	NA
UHGV-0146120_2	eggNOG-mapper	1158607.UAU_01707	Peptidase S24-like	NA
UHGV-0146120_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146120_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146120_3	PHROG	phrog_22683	NA	unknown function
UHGV-0146120_3	UniRef90	UniRef90_UPI000375DEFC	NA	NA
UHGV-0146120_3	eggNOG-mapper	1140001.I571_01696	NA	NA
UHGV-0146120_3	AcrCatalog	cluster_3962	NA	NA
UHGV-0146120_3	Structural annotation	PF13783, TIGR00285, COG3499	NA	NA
UHGV-0146120_4	PHROG	phrog_15667	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0146120_4	eggNOG-mapper	768486.EHR_09410	LysM domain	NA
UHGV-0146120_4	COG	COG1388	LysM repeat	NA
UHGV-0146120_5	PHROG	phrog_16607	NA	unknown function
UHGV-0146120_5	eggNOG-mapper	1158601.I585_02430	NA	NA
UHGV-0146120_7	KOfam	K14059	int; integrase	NA
UHGV-0146120_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0146120_7	UniRef90	UniRef90_A0A829AGU2	Tyr recombinase domain-containing protein	NA
UHGV-0146120_7	eggNOG-mapper	1140001.I571_01695	Belongs to the 'phage' integrase family	NA
UHGV-0146120_7	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0146120_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146120_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146120_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146120_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0146120_8	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0146120_8	PHROG	phrog_998	endolysin	lysis
UHGV-0146120_8	UniRef90	UniRef90_A0A6N3FK05	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0146120_8	eggNOG-mapper	272623.L70517	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0146120_8	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0146120_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0146120_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0146120_8	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0146120_9	PHROG	phrog_10091	holin	lysis
UHGV-0146120_9	UniRef90	UniRef90_A0A8E1YDY7	Phage holin	NA
UHGV-0146120_9	eggNOG-mapper	553184.ATORI0001_0989	COG5546 Small integral membrane protein	NA
UHGV-0146120_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0146120_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0146120_9	COG	COG5546	NA	NA
UHGV-0146120_9	Structural annotation	COG5546	NA	NA
UHGV-0146120_10	PHROG	phrog_1009	NA	unknown function
UHGV-0146120_11	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0146120_11	PHROG	phrog_16641	tail fiber protein	tail
UHGV-0146120_11	UniRef90	UniRef90_UPI0005EACA5A	glycerophosphodiester phosphodiesterase family protein	NA
UHGV-0146120_11	eggNOG-mapper	768486.EHR_09910	Glycerophosphoryl diester phosphodiesterase family	NA
UHGV-0146120_11	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0146120_11	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0146120_12	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-0146120_12	PHROG	phrog_16641	tail fiber protein	tail
UHGV-0146120_12	UniRef90	UniRef90_UPI000CF28C45	glycerophosphodiester phosphodiesterase family protein	NA
UHGV-0146120_12	eggNOG-mapper	1260356.D920_02057	Glycerophosphoryl diester phosphodiesterase family	NA
UHGV-0146120_12	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-0146120_12	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0146120_13	PHROG	phrog_5793	NA	unknown function
UHGV-0146120_13	UniRef90	UniRef90_UPI00190EF5BC	glycerophosphodiester phosphodiesterase	NA
UHGV-0146120_13	eggNOG-mapper	1140002.I570_02926	glycerophosphoryl diester phosphodiesterase	NA
UHGV-0146120_13	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0146120_14	UniRef90	UniRef90_A0A1V8YBY5	Phosphoribosyl-ATP diphosphatase	NA
UHGV-0146120_15	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0146120_15	UniRef90	UniRef90_A0A1V8YUC3	Prophage_tail domain-containing protein	NA
UHGV-0146120_15	eggNOG-mapper	1140002.I570_02924	Prophage endopeptidase tail	NA
UHGV-0146120_15	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0146120_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0146120_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0146120_15	COG	COG4926	Phage-related protein	NA
UHGV-0146120_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0146120_16	PHROG	phrog_5163	minor tail protein	tail
UHGV-0146120_16	UniRef90	UniRef90_R2M8Q6	NA	NA
UHGV-0146120_16	eggNOG-mapper	1140002.I570_02923	Phage tail protein	NA
UHGV-0146120_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0146120_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0146120_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146120_16	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0146120_17	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0146120_17	UniRef90	UniRef90_R2PIF0	Rhodanese domain-containing protein	NA
UHGV-0146120_17	eggNOG-mapper	157924.Q9F4J3_9CAUD	peptidoglycan catabolic process	NA
UHGV-0146120_17	Structural annotation	PF20155	NA	NA
UHGV-0146120_18	PHROG	phrog_1633	NA	unknown function
UHGV-0146120_18	UniRef90	UniRef90_UPI000CF2B809	NA	NA
UHGV-0146120_18	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-0146120_18	Pfam	PF17318	NA	DUF5361
UHGV-0146120_18	Structural annotation	PF17318	NA	NA
UHGV-0146120_19	PHROG	phrog_1526	NA	unknown function
UHGV-0146120_19	UniRef90	UniRef90_A0A380KP73	NA	NA
UHGV-0146120_19	eggNOG-mapper	1321820.HMPREF1983_00926	NA	NA
UHGV-0146120_20	PHROG	phrog_7440	major tail protein	tail
UHGV-0146120_20	UniRef90	UniRef90_UPI000F50B4BF	fibronectin type III domain-containing protein	NA
UHGV-0146120_20	eggNOG-mapper	1140001.I571_01840	NA	NA
UHGV-0146120_21	PHROG	phrog_117	major tail protein	tail
UHGV-0146120_21	UniRef90	UniRef90_A0A4U4E4Z2	Phage tail protein	NA
UHGV-0146120_21	eggNOG-mapper	1423775.BAMN01000011_gene598	domain, Protein	NA
UHGV-0146120_21	COG	COG5492	NA	NA
UHGV-0146120_21	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0146120_22	PHROG	phrog_123	tail terminator	connector
UHGV-0146120_22	UniRef90	UniRef90_D2BQF4	NA	NA
UHGV-0146120_22	eggNOG-mapper	12390.Q77MU8_9CAUD	NA	NA
UHGV-0146120_22	Structural annotation	PF06141	NA	NA
UHGV-0146120_23	PHROG	phrog_387	neck protein	connector
UHGV-0146120_23	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-0146120_24	PHROG	phrog_501	head closure Hc1	connector
UHGV-0146120_24	UniRef90	UniRef90_D2BQF2	NA	NA
UHGV-0146120_24	eggNOG-mapper	43685.Q38120_BPR1T	NA	NA
UHGV-0146120_24	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0146120_25	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0146120_25	UniRef90	UniRef90_K2QBM0	NA	NA
UHGV-0146120_25	eggNOG-mapper	1231377.C426_1735	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0146120_25	Pfam	PF09355	NA	Phage_Gp19
UHGV-0146120_25	Structural annotation	PF09355	NA	NA
UHGV-0146120_26	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0146120_26	UniRef90	UniRef90_A0A1L8QSV9	NA	NA
UHGV-0146120_26	eggNOG-mapper	875454.BAEW01000017_gene1595	NA	NA
UHGV-0146120_26	Structural annotation	PF09124	NA	NA
UHGV-0146120_27	PHROG	phrog_32396	NA	unknown function
UHGV-0146120_27	UniRef90	UniRef90_UPI0006B16153	phage capsid protein	NA
UHGV-0146120_27	eggNOG-mapper	1231377.C426_1737	Phage capsid family	NA
UHGV-0146120_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146120_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146120_28	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0146120_28	UniRef90	UniRef90_UPI000F4E3A78	NA	NA
UHGV-0146120_28	eggNOG-mapper	1423775.BAMN01000011_gene605	NA	NA
UHGV-0146120_28	Pfam	PF14265	NA	DUF4355
UHGV-0146120_28	Structural annotation	PF14265	NA	NA
UHGV-0146120_29	PHROG	phrog_17688	NA	unknown function
UHGV-0146120_29	UniRef90	UniRef90_UPI0006B18C85	terminase	NA
UHGV-0146120_29	eggNOG-mapper	1231377.C426_1739	phage terminase, large subunit	NA
UHGV-0146120_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146120_29	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0146120_31	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0146120_31	UniRef90	UniRef90_D2BQE6	NA	NA
UHGV-0146120_31	eggNOG-mapper	12390.Q77MV6_9CAUD	NA	NA
UHGV-0146120_32	PHROG	phrog_104	portal protein	head and packaging
UHGV-0146120_32	UniRef90	UniRef90_UPI00071B7BE7	phage portal protein	NA
UHGV-0146120_32	eggNOG-mapper	43685.Q38113_BPR1T	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0146120_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0146120_33	PHROG	phrog_17283	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146120_33	UniRef90	UniRef90_R2M8M6	HNHc domain-containing protein	NA
UHGV-0146120_33	eggNOG-mapper	43685.Q38112_BPR1T	HNH endonuclease	NA
UHGV-0146120_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146120_33	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0146120_34	PHROG	phrog_8955	NA	unknown function
UHGV-0146120_35	PHROG	phrog_15411	NA	unknown function
UHGV-0146120_35	UniRef90	UniRef90_UPI0009379AFF	NA	NA
UHGV-0146120_35	eggNOG-mapper	1300150.EMQU_0786	NA	NA
UHGV-0146120_35	Pfam	PF13271	NA	DUF4062
UHGV-0146120_35	COG	COG0500	SAM-dependent methyltransferase	NA