UHGV-0146128

Genome information

Genome length 36,962 bps

CDS count 62

Completeness 97.85% (high-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146128
vOTU ID	vOTU-074836
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_405832
BioSample	SAMN05414966
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.54
Jumbo phage	No

Genome content
Genome length	36,962 bps
GC content	47.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.53%
Average CDS length	562.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146128_1	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0146128_1	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0146128_2	KOfam	K14059	int; integrase	NA
UHGV-0146128_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0146128_2	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0146128_2	eggNOG-mapper	1378168.N510_03298	Belongs to the 'phage' integrase family	NA
UHGV-0146128_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146128_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0146128_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0146128_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0146128_5	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0146128_5	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0146128_5	Pfam	PF14359	NA	DUF4406
UHGV-0146128_5	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0146128_6	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0146128_6	UniRef90	UniRef90_A0A644YJG6	NlpC/P60 domain-containing protein	NA
UHGV-0146128_6	eggNOG-mapper	742740.HMPREF9474_01683	Glycosyl hydrolases family 25	NA
UHGV-0146128_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0146128_6	Structural annotation	PF11910, MF_01354, NF033742	NA	NA
UHGV-0146128_7	PHROG	phrog_608	holin	lysis
UHGV-0146128_7	UniRef90	UniRef90_R6I9L8	Putative phage holin	NA
UHGV-0146128_7	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0146128_7	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0146128_8	PHROG	phrog_1863	NA	unknown function
UHGV-0146128_8	eggNOG-mapper	1235797.C816_02840	NA	NA
UHGV-0146128_11	Structural annotation	PF02973	NA	NA
UHGV-0146128_12	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0146128_14	PHROG	phrog_6616	tail protein	tail
UHGV-0146128_14	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0146128_14	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0146128_15	PHROG	phrog_1194	NA	unknown function
UHGV-0146128_15	Pfam	PF20458	NA	DUF6711
UHGV-0146128_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0146128_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0146128_16	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0146128_16	COG	COG1511	NA	NA
UHGV-0146128_16	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0146128_17	PHROG	phrog_706	NA	unknown function
UHGV-0146128_17	UniRef90	UniRef90_UPI000F54B7AC	Gp15 family bacteriophage protein	NA
UHGV-0146128_17	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0146128_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146128_17	Structural annotation	PF06854	NA	NA
UHGV-0146128_18	PHROG	phrog_11299	NA	unknown function
UHGV-0146128_18	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0146128_18	Structural annotation	PF10666	NA	NA
UHGV-0146128_19	PHROG	phrog_3099	NA	unknown function
UHGV-0146128_19	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0146128_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146128_20	PHROG	phrog_3266	tail completion	connector
UHGV-0146128_20	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0146128_20	Structural annotation	PF20765	NA	NA
UHGV-0146128_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146128_21	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0146128_21	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0146128_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0146128_21	Structural annotation	PF11114	NA	NA
UHGV-0146128_22	PHROG	phrog_3366	NA	unknown function
UHGV-0146128_22	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0146128_22	Pfam	PF20536	NA	DUF6751
UHGV-0146128_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0146128_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146128_23	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0146128_24	Pfam	PF13912	C2H2-type zinc finger	zf-C2H2_6
UHGV-0146128_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0146128_25	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0146128_25	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0146128_25	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0146128_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0146128_26	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0146128_26	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0146128_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0146128_26	Structural annotation	PF06810	NA	NA
UHGV-0146128_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146128_28	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0146128_28	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0146128_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146128_28	COG	COG2369	NA	NA
UHGV-0146128_28	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0146128_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146128_29	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0146128_29	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0146128_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146128_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146128_31	PHROG	phrog_10250	NA	unknown function
UHGV-0146128_31	UniRef90	UniRef90_UPI000B8B31AD	PBSX family phage terminase large subunit	NA
UHGV-0146128_31	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0146128_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0146128_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146128_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146128_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0146128_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0146128_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0146128_32	UniRef90	UniRef90_UPI000C7A7EA3	terminase small subunit	NA
UHGV-0146128_32	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0146128_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0146128_33	PHROG	phrog_16945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146128_33	UniRef90	UniRef90_A0A7C6U4T3	PLD phosphodiesterase domain-containing protein	NA
UHGV-0146128_33	eggNOG-mapper	1123058.KB894251_gene2369	NA	NA
UHGV-0146128_34	PHROG	phrog_12389	NA	unknown function
UHGV-0146128_34	eggNOG-mapper	420662.Mpe_B0355	NA	NA
UHGV-0146128_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146128_35	PHROG	phrog_12862	NA	unknown function
UHGV-0146128_35	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-0146128_35	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0146128_35	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0146128_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146128_35	COG	COG0863	DNA modification methylase	NA
UHGV-0146128_35	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0146128_36	PHROG	phrog_11237	NA	unknown function
UHGV-0146128_36	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0146128_36	Structural annotation	TIGR01636	NA	NA
UHGV-0146128_37	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0146128_37	UniRef90	UniRef90_UPI0004115370	methyltransferase	NA
UHGV-0146128_37	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0146128_37	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0146128_37	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0146128_37	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0146128_37	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0146128_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146128_38	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0146128_38	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0146128_39	PHROG	phrog_24518	NA	unknown function
UHGV-0146128_39	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0146128_40	UniRef90	UniRef90_UPI0009ECF5B3	Lar family restriction alleviation protein	NA
UHGV-0146128_40	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0146128_41	PHROG	phrog_3136	NA	unknown function
UHGV-0146128_41	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0146128_41	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0146128_41	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0146128_44	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0146128_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146128_44	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146128_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146128_44	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0146128_45	PHROG	phrog_15609	NA	unknown function
UHGV-0146128_45	UniRef90	UniRef90_A0A7G9WGA3	NA	NA
UHGV-0146128_45	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0146128_45	Pfam	PF11300	NA	DUF3102
UHGV-0146128_45	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0146128_46	PHROG	phrog_8470	NA	unknown function
UHGV-0146128_46	UniRef90	UniRef90_A0A238ZSA1	PcfJ-like protein	NA
UHGV-0146128_46	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0146128_46	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0146128_46	Structural annotation	PF14284	NA	NA
UHGV-0146128_47	PHROG	phrog_7445	NA	unknown function
UHGV-0146128_47	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0146128_47	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0146128_47	Structural annotation	PF14058	NA	NA
UHGV-0146128_48	PHROG	phrog_824	NA	unknown function
UHGV-0146128_48	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0146128_48	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0146128_48	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0146128_48	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0146128_52	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0146128_54	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146128_54	PHROG	phrog_18750	NA	unknown function
UHGV-0146128_54	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0146128_54	eggNOG-mapper	445972.ANACOL_03333	Cell wall hydrolase	NA
UHGV-0146128_54	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0146128_54	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0146128_54	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0146128_56	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0146128_56	UniRef90	UniRef90_A0A3M1PVL4	XRE family transcriptional regulator (Fragment)	NA
UHGV-0146128_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146128_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146128_56	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0146128_58	PHROG	phrog_585	NA	unknown function
UHGV-0146128_58	UniRef90	UniRef90_UPI001C2179E8	NA	NA
UHGV-0146128_58	eggNOG-mapper	482234.SCAZ3_03560	NA	NA
UHGV-0146128_58	Pfam	PF10711	NA	DUF2513
UHGV-0146128_58	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0146128_60	UniRef90	UniRef90_A0A348Z948	Transcriptional regulator	NA
UHGV-0146128_60	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0146128_60	Pfam	PF05339	NA	DUF739
UHGV-0146128_60	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0146128_61	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146128_61	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146128_61	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-0146128_61	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0146128_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146128_61	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146128_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146128_61	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0146128_62	PHROG	phrog_5978	NA	unknown function
UHGV-0146128_62	UniRef90	UniRef90_R5GRF3	Fic family protein	NA
UHGV-0146128_62	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-0146128_62	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0146128_62	COG	COG3177	Fic family protein	NA