UHGV-0146131

Genome information

Genome length 28,720 bps

CDS count 41

Completeness 67.90% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146131
vOTU ID	vOTU-025129
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_405838
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.26
Jumbo phage	No

Genome content
Genome length	28,720 bps
GC content	55.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.40%
Average CDS length	644.42 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146131_1	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0146131_1	UniRef90	UniRef90_D4JYQ1	NA	NA
UHGV-0146131_1	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0146131_1	Pfam	PF19789	NA	DUF6273
UHGV-0146131_1	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0146131_3	PHROG	phrog_3558	tail protein	tail
UHGV-0146131_3	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0146131_3	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0146131_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0146131_3	COG	COG4926	Phage-related protein	NA
UHGV-0146131_3	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0146131_4	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0146131_4	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0146131_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146131_4	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0146131_5	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0146131_5	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0146131_5	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0146131_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0146131_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0146131_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0146131_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0146131_8	PHROG	phrog_885	major tail protein	tail
UHGV-0146131_8	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0146131_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0146131_9	Structural annotation	PF13554	NA	NA
UHGV-0146131_10	PHROG	phrog_17977	NA	unknown function
UHGV-0146131_10	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0146131_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0146131_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-0146131_12	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0146131_12	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0146131_12	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0146131_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0146131_14	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0146131_14	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0146131_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0146131_15	PHROG	phrog_21498	NA	unknown function
UHGV-0146131_15	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0146131_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0146131_15	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0146131_16	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0146131_16	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0146131_16	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0146131_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0146131_16	COG	COG2369	NA	NA
UHGV-0146131_16	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0146131_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0146131_17	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0146131_17	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0146131_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0146131_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0146131_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146131_18	PHROG	phrog_10250	NA	unknown function
UHGV-0146131_18	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0146131_18	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0146131_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0146131_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0146131_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146131_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146131_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0146131_19	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0146131_19	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0146131_19	Structural annotation	PF04218	NA	NA
UHGV-0146131_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146131_20	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0146131_20	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0146131_20	Pfam	PF07374	NA	DUF1492
UHGV-0146131_20	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0146131_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0146131_21	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146131_21	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0146131_21	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0146131_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0146131_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0146131_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0146131_22	PHROG	phrog_3136	NA	unknown function
UHGV-0146131_22	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0146131_22	Pfam	PF04266	ASCH domain	ASCH
UHGV-0146131_22	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0146131_22	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0146131_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0146131_23	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0146131_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0146131_23	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0146131_25	Structural annotation	PF11417	NA	NA
UHGV-0146131_26	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0146131_26	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0146131_26	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0146131_26	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0146131_26	Pfam	PF19808	NA	DUF6291
UHGV-0146131_26	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0146131_26	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0146131_26	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0146131_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146131_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146131_27	UniRef90	UniRef90_UPI001D0F2FBF	single-stranded DNA-binding protein	NA
UHGV-0146131_27	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0146131_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146131_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146131_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146131_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146131_27	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0146131_28	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146131_28	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0146131_28	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0146131_28	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0146131_31	Structural annotation	PF09537	NA	NA
UHGV-0146131_32	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0146131_33	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0146131_35	PHROG	phrog_4433	NA	unknown function
UHGV-0146131_35	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0146131_35	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0146131_35	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0146131_37	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0146131_37	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0146131_38	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0146131_38	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0146131_38	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0146131_38	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0146131_38	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0146131_38	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0146131_38	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0146131_38	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0146131_40	Structural annotation	PF16857, NF001981	NA	NA
UHGV-0146131_41	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA