UHGV-0146159

Genome information

Genome length 28,882 bps

CDS count 53

Completeness 77.34% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146159
vOTU ID	vOTU-026569
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_406296
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.08
Jumbo phage	No

Genome content
Genome length	28,882 bps
GC content	54.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.34%
Average CDS length	491.43 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146159_3	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0146159_3	UniRef90	UniRef90_UPI0015C5E40B	HK97 gp10 family phage protein	NA
UHGV-0146159_3	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-0146159_3	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0146159_4	Structural annotation	PF06810	NA	NA
UHGV-0146159_5	PHROG	phrog_544	major head protein	head and packaging
UHGV-0146159_5	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0146159_5	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0146159_5	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0146159_5	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0146159_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0146159_7	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0146159_8	Structural annotation	PF11367	NA	NA
UHGV-0146159_9	PHROG	phrog_885	major tail protein	tail
UHGV-0146159_9	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0146159_9	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0146159_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0146159_10	PHROG	phrog_18646	NA	unknown function
UHGV-0146159_10	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0146159_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0146159_11	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0146159_11	COG	COG1511	NA	NA
UHGV-0146159_11	Structural annotation	PF20155	NA	NA
UHGV-0146159_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0146159_13	PHROG	phrog_32744	NA	unknown function
UHGV-0146159_13	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0146159_13	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0146159_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0146159_18	PHROG	phrog_30034	NA	unknown function
UHGV-0146159_18	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0146159_18	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0146159_18	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0146159_18	Structural annotation	PF14600	NA	NA
UHGV-0146159_20	PHROG	phrog_14030	NA	unknown function
UHGV-0146159_20	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0146159_20	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0146159_20	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0146159_20	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0146159_20	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0146159_20	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0146159_21	PHROG	phrog_199	holin	lysis
UHGV-0146159_21	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0146159_21	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0146159_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0146159_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0146159_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0146159_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0146159_22	PHROG	phrog_3754	NA	unknown function
UHGV-0146159_22	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0146159_23	PHROG	phrog_21718	NA	unknown function
UHGV-0146159_23	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0146159_24	PHROG	phrog_22984	NA	unknown function
UHGV-0146159_25	PHROG	phrog_16490	NA	unknown function
UHGV-0146159_25	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0146159_26	PHROG	phrog_20016	NA	unknown function
UHGV-0146159_26	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0146159_26	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0146159_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0146159_27	Structural annotation	PF12510	NA	NA
UHGV-0146159_28	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0146159_29	KOfam	K14059	int; integrase	NA
UHGV-0146159_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0146159_29	UniRef90	UniRef90_UPI001874116E	tyrosine-type recombinase/integrase	NA
UHGV-0146159_29	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0146159_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146159_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146159_29	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0146159_30	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0146159_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146159_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0146159_30	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0146159_31	UniRef90	UniRef90_A0A7C6FQM2	SAP domain-containing protein	NA
UHGV-0146159_31	eggNOG-mapper	1408323.JQKK01000005_gene152	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0146159_31	Pfam	PF02037	SAP domain	SAP
UHGV-0146159_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146159_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146159_33	UniRef90	UniRef90_A0A1Q9J555	HTH cro/C1-type domain-containing protein	NA
UHGV-0146159_33	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0146159_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146159_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146159_33	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0146159_38	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0146159_38	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0146159_41	NCBIFam	TIGR01643.1	YD repeat-containing protein	NA
UHGV-0146159_46	PHROG	phrog_824	NA	unknown function
UHGV-0146159_46	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0146159_46	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0146159_46	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0146159_47	PHROG	phrog_24518	NA	unknown function
UHGV-0146159_47	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0146159_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0146159_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0146159_48	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0146159_48	eggNOG-mapper	411902.CLOBOL_06768	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0146159_48	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0146159_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0146159_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0146159_48	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0146159_49	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0146159_49	UniRef90	UniRef90_A0A4U8T4F4	Sugar-phosphate nucleotidyltransferase	NA
UHGV-0146159_49	eggNOG-mapper	537971.HCCG_00428	NA	NA
UHGV-0146159_49	Structural annotation	PF05869, MF_00607, NF000468, COG0030	NA	NA
UHGV-0146159_51	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0146159_51	Pfam	PF04448	NA	DUF551
UHGV-0146159_51	Structural annotation	NF041588	NA	NA
UHGV-0146159_53	Pfam	PF09297	NADH pyrophosphatase zinc ribbon domain	zf-NADH-PPase