UHGV-0146166

Genome information

Genome length 22,850 bps

CDS count 34

Completeness 55.25% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146166
vOTU ID	vOTU-030543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_406310
BioSample	SAMN05414992
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.41
Jumbo phage	No

Genome content
Genome length	22,850 bps
GC content	49.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	97.29%
Average CDS length	659.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146166_2	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-0146166_2	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0146166_4	PHROG	phrog_263	holin	lysis
UHGV-0146166_4	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0146166_4	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0146166_4	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0146166_4	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0146166_4	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0146166_5	PHROG	phrog_9428	NA	unknown function
UHGV-0146166_5	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0146166_5	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0146166_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146166_6	PHROG	phrog_435	endolysin	lysis
UHGV-0146166_6	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0146166_6	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0146166_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0146166_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146166_6	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0146166_10	Structural annotation	PF10651	NA	NA
UHGV-0146166_12	PHROG	phrog_6616	tail protein	tail
UHGV-0146166_12	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0146166_13	PHROG	phrog_1194	NA	unknown function
UHGV-0146166_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0146166_14	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0146166_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0146166_14	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0146166_14	COG	COG1511	NA	NA
UHGV-0146166_14	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0146166_15	PHROG	phrog_706	NA	unknown function
UHGV-0146166_15	UniRef90	UniRef90_UPI000F54B7AC	Gp15 family bacteriophage protein	NA
UHGV-0146166_15	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0146166_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146166_15	Structural annotation	PF06854	NA	NA
UHGV-0146166_16	PHROG	phrog_11299	NA	unknown function
UHGV-0146166_16	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-0146166_16	Structural annotation	PF10666	NA	NA
UHGV-0146166_17	PHROG	phrog_3099	NA	unknown function
UHGV-0146166_17	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0146166_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146166_18	PHROG	phrog_3266	tail completion	connector
UHGV-0146166_18	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0146166_18	Structural annotation	PF20765	NA	NA
UHGV-0146166_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146166_19	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0146166_19	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0146166_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0146166_19	Structural annotation	PF11114	NA	NA
UHGV-0146166_20	PHROG	phrog_3366	NA	unknown function
UHGV-0146166_20	eggNOG-mapper	1304866.K413DRAFT_3040	NA	NA
UHGV-0146166_20	Pfam	PF20536	NA	DUF6751
UHGV-0146166_20	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0146166_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146166_21	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0146166_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0146166_22	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0146166_22	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0146166_22	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0146166_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0146166_23	UniRef90	UniRef90_UPI0018995066	phage scaffolding protein	NA
UHGV-0146166_23	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0146166_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0146166_23	Structural annotation	PF06810	NA	NA
UHGV-0146166_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146166_25	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0146166_25	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0146166_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146166_25	COG	COG2369	NA	NA
UHGV-0146166_25	Structural annotation	PF06152	NA	NA
UHGV-0146166_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146166_26	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0146166_27	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0146166_27	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0146166_27	UniRef90	UniRef90_A0A3D5LLL5	Beta sliding clamp	NA
UHGV-0146166_27	eggNOG-mapper	411471.SUBVAR_07116	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0146166_27	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0146166_27	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0146166_27	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0146166_27	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0146166_27	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0146166_28	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0146166_28	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0146166_28	UniRef90	UniRef90_UPI001C39E2EC	DNA methylase N-4	NA
UHGV-0146166_28	eggNOG-mapper	1123489.AUAN01000010_gene370	DEAD-like helicases superfamily	NA
UHGV-0146166_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0146166_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146166_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0146166_28	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0146166_32	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146166_32	PHROG	phrog_18750	NA	unknown function
UHGV-0146166_32	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0146166_32	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-0146166_32	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0146166_32	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0146166_33	PHROG	phrog_6058	NA	unknown function
UHGV-0146166_33	UniRef90	UniRef90_A0A0U9H7T0	Modification methylase SinI	NA
UHGV-0146166_33	eggNOG-mapper	1123288.SOV_2c10360	NA	NA
UHGV-0146166_33	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0146166_34	PHROG	phrog_27197	NA	unknown function
UHGV-0146166_34	COG	COG5164	Transcription elongation factor SPT5	NA