UHGV-0146277

Genome information

Genome length 31,024 bps

CDS count 37

Completeness 82.27% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146277
vOTU ID	vOTU-035081
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_403304
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.93
Jumbo phage	No

Genome content
Genome length	31,024 bps
GC content	44.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	94.35%
Average CDS length	793.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146277_1	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146277_1	UniRef90	UniRef90_UPI001C389F24	NA	NA
UHGV-0146277_1	eggNOG-mapper	445335.CBN_1358	NA	NA
UHGV-0146277_1	Structural annotation	PF05037	NA	NA
UHGV-0146277_2	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0146277_2	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0146277_2	UniRef90	UniRef90_UPI0004070520	DNA polymerase	NA
UHGV-0146277_2	eggNOG-mapper	1280692.AUJL01000009_gene2997	DNA polymerase elongation subunit (Family B)	NA
UHGV-0146277_2	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0146277_2	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0146277_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146277_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146277_3	UniRef90	UniRef90_A0A1H8Z195	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0146277_3	eggNOG-mapper	702113.PP1Y_AT2480	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0146277_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0146277_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146277_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0146277_4	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0146277_4	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0146277_4	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0146277_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0146277_4	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0146277_5	PHROG	phrog_236	nucleotide kinase	other
UHGV-0146277_5	UniRef90	UniRef90_D7GQK6	NA	NA
UHGV-0146277_5	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0146277_5	Pfam	PF11753	NA	DUF3310
UHGV-0146277_5	Structural annotation	PF11753	NA	NA
UHGV-0146277_7	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0146277_7	UniRef90	UniRef90_A0A2N5PMN0	Nucleotide pyrophosphohydrolase	NA
UHGV-0146277_7	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0146277_7	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0146277_7	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0146277_7	Structural annotation	PF01503, MF_01020, NF001613, COG1694	NA	NA
UHGV-0146277_8	PHROG	phrog_6721	NA	unknown function
UHGV-0146277_8	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-0146277_8	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0146277_10	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0146277_10	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0146277_10	UniRef90	UniRef90_A0A1G5S3S7	mRNA interferase	NA
UHGV-0146277_10	eggNOG-mapper	865861.AZSU01000001_gene168	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0146277_10	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0146277_10	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0146277_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0146277_11	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0146277_11	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-0146277_11	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-0146277_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0146277_11	Pfam	PF19263	NA	DUF5906
UHGV-0146277_11	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0146277_11	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0146277_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0146277_11	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0146277_12	UniRef90	UniRef90_A0A843H1D7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0146277_12	eggNOG-mapper	1321779.HMPREF1984_01313	NA	NA
UHGV-0146277_12	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0146277_12	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0146277_13	PHROG	phrog_1863	NA	unknown function
UHGV-0146277_13	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0146277_14	KOfam	K07273	acm; lysozyme	NA
UHGV-0146277_14	PHROG	phrog_291	endolysin	lysis
UHGV-0146277_14	UniRef90	UniRef90_R6CHD4	Lyzozyme M1 (1 4-beta-N-acetylmuramidase)	NA
UHGV-0146277_14	eggNOG-mapper	938289.CAJN020000007_gene311	Pfam:Cpl-7	NA
UHGV-0146277_14	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0146277_14	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0146277_14	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0146277_14	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0146277_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0146277_15	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0146277_15	eggNOG-mapper	35241.Q9AYX3_BPTU2	endonuclease activity	NA
UHGV-0146277_15	Structural annotation	PF07141	NA	NA
UHGV-0146277_16	PHROG	phrog_18805	NA	unknown function
UHGV-0146277_16	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0146277_17	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0146277_17	UniRef90	UniRef90_A0A843H3P4	HNH endonuclease	NA
UHGV-0146277_17	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0146277_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146277_17	Pfam	PF13671	AAA domain	AAA_33
UHGV-0146277_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146277_17	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0146277_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0146277_19	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0146277_19	eggNOG-mapper	1157490.EL26_20725	Phage Terminase	NA
UHGV-0146277_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0146277_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0146277_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146277_19	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0146277_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0146277_20	UniRef90	UniRef90_R7FBP4	HK97 family phage portal protein	NA
UHGV-0146277_20	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0146277_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0146277_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0146277_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0146277_21	KOfam	K06904	NA	NA
UHGV-0146277_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0146277_21	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0146277_21	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0146277_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0146277_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0146277_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0146277_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0146277_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0146277_22	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-0146277_22	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0146277_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146277_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146277_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0146277_22	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146277_24	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0146277_24	eggNOG-mapper	1157490.EL26_20700	NA	NA
UHGV-0146277_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0146277_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0146277_25	Structural annotation	TIGR01725	NA	NA
UHGV-0146277_26	Structural annotation	PF05657	NA	NA
UHGV-0146277_27	PHROG	phrog_88	major tail protein	tail
UHGV-0146277_27	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0146277_27	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-0146277_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0146277_27	COG	COG5492	NA	NA
UHGV-0146277_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0146277_29	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0146277_29	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0146277_29	COG	COG5412	Phage-related protein	NA
UHGV-0146277_29	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0146277_30	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0146277_30	UniRef90	UniRef90_A0A6N2W6N8	Phage tail protein	NA
UHGV-0146277_30	eggNOG-mapper	755731.Clo1100_0556	Phage tail protein	NA
UHGV-0146277_30	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0146277_30	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146277_30	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0146277_31	PHROG	phrog_538	minor tail protein	tail
UHGV-0146277_31	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0146277_31	eggNOG-mapper	742733.HMPREF9469_05018	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0146277_31	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0146277_31	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0146277_32	PHROG	phrog_1220	head protein	head and packaging
UHGV-0146277_32	UniRef90	UniRef90_C2PP59	Phage structural protein	NA
UHGV-0146277_32	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0146277_32	Structural annotation	PF03906, PF20747	NA	NA
UHGV-0146277_35	PHROG	phrog_25567	NA	unknown function
UHGV-0146277_35	eggNOG-mapper	411469.EUBHAL_00738	NA	NA
UHGV-0146277_35	AcrCatalog	cluster_37554	NA	NA
UHGV-0146277_36	eggNOG-mapper	1463858.JOHR01000028_gene89	NA	NA
UHGV-0146277_37	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0146277_37	PHROG	phrog_95	integrase	integration and excision
UHGV-0146277_37	UniRef90	UniRef90_A0A3A9EBM7	Recombinase family protein (Fragment)	NA
UHGV-0146277_37	eggNOG-mapper	1123263.AUKY01000076_gene1782	Resolvase, N terminal domain	NA
UHGV-0146277_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0146277_37	Pfam	PF07508	Recombinase	Recombinase
UHGV-0146277_37	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0146277_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0146277_37	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA