UHGV-0146297

Genome information

Genome length 30,850 bps

CDS count 43

Completeness 83.93% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146297
vOTU ID	vOTU-027107
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442815
BioSample	SAMN05971589
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.46
Jumbo phage	No

Genome content
Genome length	30,850 bps
GC content	42.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.56%
Average CDS length	651.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146297_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0146297_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0146297_1	UniRef90	UniRef90_A0A173Z7C9	Resolvase, N terminal domain	NA
UHGV-0146297_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0146297_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0146297_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0146297_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0146297_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0146297_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0146297_2	UniRef90	UniRef90_UPI00156DF264	FxLYD domain-containing protein	NA
UHGV-0146297_2	eggNOG-mapper	1408323.JQKK01000024_gene1319	NA	NA
UHGV-0146297_2	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0146297_2	Structural annotation	PF11906, PF09624, MF_00791, NF038353, NF033903, COG5633	NA	NA
UHGV-0146297_3	eggNOG-mapper	742765.HMPREF9457_02092	NA	NA
UHGV-0146297_3	Structural annotation	PF14869, NF040528, COG4731	NA	NA
UHGV-0146297_4	PHROG	phrog_87	metallo-protease	other
UHGV-0146297_4	UniRef90	UniRef90_UPI00189A815C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0146297_4	eggNOG-mapper	411461.DORFOR_00033	IrrE N-terminal-like domain	NA
UHGV-0146297_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0146297_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0146297_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0146297_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0146297_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146297_5	UniRef90	UniRef90_UPI001C00F541	helix-turn-helix domain-containing protein	NA
UHGV-0146297_5	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146297_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146297_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146297_5	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0146297_6	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-0146297_6	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0146297_6	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0146297_6	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0146297_7	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0146297_7	UniRef90	UniRef90_UPI001C02AC2E	Bro-N domain-containing protein	NA
UHGV-0146297_7	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0146297_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0146297_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0146297_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0146297_7	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0146297_8	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0146297_8	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0146297_9	PHROG	phrog_1029	NA	unknown function
UHGV-0146297_9	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0146297_9	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0146297_10	eggNOG-mapper	1232453.BAIF02000057_gene1147	NA	NA
UHGV-0146297_12	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0146297_12	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0146297_12	UniRef90	UniRef90_UPI00156F2D67	Lar family restriction alleviation protein	NA
UHGV-0146297_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0146297_12	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0146297_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0146297_12	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0146297_13	PHROG	phrog_15198	NA	unknown function
UHGV-0146297_13	UniRef90	UniRef90_A0A3R5X694	NA	NA
UHGV-0146297_13	Pfam	PF04448	NA	DUF551
UHGV-0146297_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146297_14	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0146297_14	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0146297_14	Structural annotation	PF02996	NA	NA
UHGV-0146297_15	PHROG	phrog_3634	NA	unknown function
UHGV-0146297_15	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0146297_15	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0146297_16	PHROG	phrog_2412	NA	unknown function
UHGV-0146297_16	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0146297_16	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0146297_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146297_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0146297_17	UniRef90	UniRef90_A0A414U7F9	PBSX family phage terminase large subunit	NA
UHGV-0146297_17	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0146297_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0146297_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146297_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146297_17	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0146297_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146297_18	UniRef90	UniRef90_A0A414QMA7	Phage capsid protein	NA
UHGV-0146297_18	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0146297_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146297_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146297_19	UniRef90	UniRef90_UPI001899F79D	phage minor capsid protein	NA
UHGV-0146297_19	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0146297_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146297_19	COG	COG2369	NA	NA
UHGV-0146297_19	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0146297_21	PHROG	phrog_3675	NA	unknown function
UHGV-0146297_21	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0146297_21	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0146297_21	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0146297_21	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0146297_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0146297_22	UniRef90	UniRef90_A0A1C5W5U5	Phage minor structural protein GP20	NA
UHGV-0146297_22	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0146297_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0146297_22	Structural annotation	PF06810	NA	NA
UHGV-0146297_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0146297_23	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0146297_23	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0146297_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146297_24	UniRef90	UniRef90_C4IFE6	Putative gp8	NA
UHGV-0146297_24	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0146297_24	Structural annotation	PF05135	NA	NA
UHGV-0146297_25	PHROG	phrog_3366	NA	unknown function
UHGV-0146297_25	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0146297_25	Pfam	PF20536	NA	DUF6751
UHGV-0146297_25	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0146297_26	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146297_26	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0146297_26	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0146297_26	Structural annotation	PF11114	NA	NA
UHGV-0146297_27	PHROG	phrog_3266	tail completion	connector
UHGV-0146297_27	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0146297_27	Structural annotation	PF12691	NA	NA
UHGV-0146297_28	PHROG	phrog_3099	NA	unknown function
UHGV-0146297_28	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0146297_28	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146297_29	PHROG	phrog_4450	NA	unknown function
UHGV-0146297_29	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0146297_29	Pfam	PF20378	NA	DUF6673
UHGV-0146297_29	Structural annotation	PF20378	NA	NA
UHGV-0146297_30	PHROG	phrog_706	NA	unknown function
UHGV-0146297_30	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0146297_30	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0146297_30	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146297_30	Structural annotation	PF06854	NA	NA
UHGV-0146297_31	PHROG	phrog_5602	NA	unknown function
UHGV-0146297_31	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0146297_31	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0146297_32	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0146297_32	UniRef90	UniRef90_A0A173TTL9	Phage-related protein	NA
UHGV-0146297_32	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0146297_32	COG	COG1511	NA	NA
UHGV-0146297_32	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0146297_33	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0146297_33	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0146297_34	PHROG	phrog_538	minor tail protein	tail
UHGV-0146297_34	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0146297_34	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0146297_34	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0146297_34	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0146297_35	PHROG	phrog_9994	NA	unknown function
UHGV-0146297_35	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0146297_35	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0146297_35	Structural annotation	PF20747	NA	NA
UHGV-0146297_36	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0146297_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0146297_36	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0146297_36	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0146297_36	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0146297_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146297_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0146297_36	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0146297_39	PHROG	phrog_27545	NA	unknown function
UHGV-0146297_39	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0146297_39	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0146297_39	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0146297_40	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0146297_40	Structural annotation	PF20124	NA	NA
UHGV-0146297_41	PHROG	phrog_4105	NA	unknown function
UHGV-0146297_41	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0146297_42	PHROG	phrog_10091	holin	lysis
UHGV-0146297_42	UniRef90	UniRef90_A0A374E7T7	Phage holin	NA
UHGV-0146297_42	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0146297_42	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0146297_42	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0146297_42	COG	COG5546	NA	NA
UHGV-0146297_42	Structural annotation	COG5546	NA	NA
UHGV-0146297_43	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0146297_43	PHROG	phrog_3513	endolysin	lysis
UHGV-0146297_43	UniRef90	UniRef90_A0A415N133	CHAP domain-containing protein	NA
UHGV-0146297_43	eggNOG-mapper	483218.BACPEC_01324	amidase activity	NA
UHGV-0146297_43	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0146297_43	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0146297_43	COG	COG1388	LysM repeat	NA
UHGV-0146297_43	Structural annotation	PF08230, PF01832, PF10030, NF038016, TIGR02594, COG1705, COG4322	NA	NA