UHGV-0146325

Genome information

Genome length 37,889 bps

CDS count 56

Completeness 99.65% (high-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146325
vOTU ID	vOTU-010328
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400078
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.37
Jumbo phage	No

Genome content
Genome length	37,889 bps
GC content	42.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.58%
Average CDS length	643.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146325_1	KOfam	K14059	int; integrase	NA
UHGV-0146325_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0146325_1	UniRef90	UniRef90_A0A3A6JBV3	Site-specific integrase	NA
UHGV-0146325_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0146325_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146325_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146325_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0146325_2	Structural annotation	PF03965, NF033789, COG3682	NA	NA
UHGV-0146325_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146325_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146325_3	UniRef90	UniRef90_A0A822LS29	HTH cro/C1-type domain-containing protein	NA
UHGV-0146325_3	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0146325_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146325_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146325_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146325_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0146325_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0146325_4	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0146325_4	UniRef90	UniRef90_A0A822LL88	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0146325_4	eggNOG-mapper	1123263.AUKY01000072_gene2113	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0146325_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0146325_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146325_4	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0146325_6	eggNOG-mapper	883156.HMPREF9282_01215	NA	NA
UHGV-0146325_6	Structural annotation	NF040556	NA	NA
UHGV-0146325_8	Structural annotation	PF09202, MF_01819, NF008565, COG3432	NA	NA
UHGV-0146325_9	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0146325_9	Structural annotation	PF20063	NA	NA
UHGV-0146325_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146325_11	UniRef90	UniRef90_A0A173W7Z3	Putative phage-type endonuclease	NA
UHGV-0146325_11	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0146325_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0146325_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0146325_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0146325_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0146325_12	PHROG	phrog_674	NA	unknown function
UHGV-0146325_12	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-0146325_12	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0146325_12	Pfam	PF07083	NA	DUF1351
UHGV-0146325_12	Structural annotation	PF07083	NA	NA
UHGV-0146325_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0146325_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146325_15	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-0146325_15	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0146325_15	Pfam	PF03837	RecT family	RecT
UHGV-0146325_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0146325_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0146325_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0146325_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146325_16	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0146325_16	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0146325_16	Pfam	PF06356	NA	DUF1064
UHGV-0146325_16	Structural annotation	PF06356	NA	NA
UHGV-0146325_17	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146325_17	UniRef90	UniRef90_A0A822LMB7	NA	NA
UHGV-0146325_17	eggNOG-mapper	1256908.HMPREF0373_00661	NA	NA
UHGV-0146325_17	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0146325_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0146325_18	PHROG	phrog_9804	NA	unknown function
UHGV-0146325_18	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-0146325_18	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-0146325_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0146325_18	Structural annotation	PF11417	NA	NA
UHGV-0146325_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146325_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0146325_19	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0146325_19	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0146325_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0146325_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146325_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0146325_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0146325_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0146325_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0146325_20	UniRef90	UniRef90_A0A3A6J7Y8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0146325_20	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0146325_20	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0146325_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0146325_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0146325_20	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0146325_21	PHROG	phrog_3205	NA	unknown function
UHGV-0146325_21	UniRef90	UniRef90_E6EWD7	EF-hand domain-containing protein	NA
UHGV-0146325_21	eggNOG-mapper	1243664.CAVL020000054_gene3040	NA	NA
UHGV-0146325_22	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0146325_26	PHROG	phrog_20593	NA	unknown function
UHGV-0146325_27	PHROG	phrog_8684	NA	unknown function
UHGV-0146325_27	UniRef90	UniRef90_A0A822LMA9	YopX domain-containing protein	NA
UHGV-0146325_27	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0146325_27	Pfam	PF09643	YopX protein	YopX
UHGV-0146325_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0146325_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0146325_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146325_29	UniRef90	UniRef90_A0A371AT86	NA	NA
UHGV-0146325_29	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0146325_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0146325_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0146325_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0146325_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0146325_31	UniRef90	UniRef90_A0A3R6PDT1	Terminase small subunit	NA
UHGV-0146325_31	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0146325_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0146325_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0146325_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0146325_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146325_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0146325_32	UniRef90	UniRef90_A0A822LI54	Terminase_3 domain-containing protein	NA
UHGV-0146325_32	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0146325_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0146325_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0146325_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146325_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146325_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0146325_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0146325_33	UniRef90	UniRef90_A0A3A6J7Z8	Phage portal protein	NA
UHGV-0146325_33	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0146325_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0146325_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0146325_34	eggNOG-mapper	478749.BRYFOR_08557	NA	NA
UHGV-0146325_34	Structural annotation	PF10651	NA	NA
UHGV-0146325_35	Structural annotation	PF07233, MF_00791, NF003967, COG2967	NA	NA
UHGV-0146325_36	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0146325_36	UniRef90	UniRef90_U2PKN7	Phage protein F-like protein	NA
UHGV-0146325_36	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0146325_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0146325_36	COG	COG2369	NA	NA
UHGV-0146325_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0146325_37	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0146325_37	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0146325_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0146325_37	Structural annotation	PF06810	NA	NA
UHGV-0146325_38	PHROG	phrog_212	major head protein	head and packaging
UHGV-0146325_38	UniRef90	UniRef90_A0A3A6J9J0	Phage capsid protein	NA
UHGV-0146325_38	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0146325_38	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0146325_40	PHROG	phrog_1236	head protein	head and packaging
UHGV-0146325_40	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0146325_40	Structural annotation	PF05135	NA	NA
UHGV-0146325_41	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0146325_41	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0146325_41	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0146325_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0146325_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0146325_42	UniRef90	UniRef90_A0A416I9Q2	HK97 gp10 family phage protein	NA
UHGV-0146325_42	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0146325_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0146325_43	PHROG	phrog_957	head protein	head and packaging
UHGV-0146325_43	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0146325_43	Structural annotation	PF12691	NA	NA
UHGV-0146325_44	PHROG	phrog_885	major tail protein	tail
UHGV-0146325_44	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0146325_44	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0146325_45	PHROG	phrog_1021	NA	unknown function
UHGV-0146325_45	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0146325_46	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0146325_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0146325_47	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0146325_47	COG	COG5412	Phage-related protein	NA
UHGV-0146325_47	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0146325_48	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0146325_48	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0146325_48	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0146325_49	PHROG	phrog_538	minor tail protein	tail
UHGV-0146325_49	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0146325_49	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0146325_49	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0146325_49	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0146325_50	PHROG	phrog_9994	NA	unknown function
UHGV-0146325_50	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0146325_50	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0146325_50	Structural annotation	NF012201	NA	NA
UHGV-0146325_51	PHROG	phrog_1009	NA	unknown function
UHGV-0146325_51	UniRef90	UniRef90_A0A3A6JFT7	Branched-chain amino acid ABC transporter permease	NA
UHGV-0146325_51	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0146325_52	PHROG	phrog_18218	NA	unknown function
UHGV-0146325_52	UniRef90	UniRef90_A0A374AVT4	Ribonuclease	NA
UHGV-0146325_52	eggNOG-mapper	411474.COPEUT_02638	NA	NA
UHGV-0146325_52	Structural annotation	PF06946	NA	NA
UHGV-0146325_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0146325_53	PHROG	phrog_291	endolysin	lysis
UHGV-0146325_53	UniRef90	UniRef90_A0A1Q6MG54	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0146325_53	eggNOG-mapper	411474.COPEUT_02639	hydrolase, family 25	NA
UHGV-0146325_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0146325_53	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0146325_53	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0146325_53	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0146325_56	UniRef90	UniRef90_C0D8J2	HTH cro/C1-type domain-containing protein	NA
UHGV-0146325_56	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0146325_56	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0146325_56	Structural annotation	PF13443, NF000090, COG3655	NA	NA