UHGV-0146326

Genome information

Genome length 34,375 bps

CDS count 55

Completeness 91.00% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146326
vOTU ID	vOTU-061265
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400079
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.00% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.34
Jumbo phage	No

Genome content
Genome length	34,375 bps
GC content	50.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.32%
Average CDS length	575.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146326_4	UniRef90	UniRef90_R6TP76	RHH_1 domain-containing protein	NA
UHGV-0146326_4	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0146326_4	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0146326_7	PHROG	phrog_263	holin	lysis
UHGV-0146326_7	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0146326_7	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0146326_7	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0146326_7	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0146326_7	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0146326_8	PHROG	phrog_9428	NA	unknown function
UHGV-0146326_8	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0146326_8	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0146326_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146326_9	PHROG	phrog_435	endolysin	lysis
UHGV-0146326_9	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0146326_9	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0146326_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0146326_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146326_9	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0146326_12	Structural annotation	PF02973	NA	NA
UHGV-0146326_13	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0146326_13	Structural annotation	PF10651, NF009453	NA	NA
UHGV-0146326_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0146326_15	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0146326_15	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0146326_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0146326_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0146326_15	COG	COG4926	Phage-related protein	NA
UHGV-0146326_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0146326_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0146326_16	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0146326_16	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0146326_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146326_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0146326_17	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0146326_17	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0146326_17	eggNOG-mapper	1216932.CM240_1382	tape measure	NA
UHGV-0146326_17	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0146326_17	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0146326_18	Structural annotation	PF11836	NA	NA
UHGV-0146326_19	PHROG	phrog_88	major tail protein	tail
UHGV-0146326_19	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0146326_19	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0146326_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0146326_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0146326_20	PHROG	phrog_78	tail terminator	connector
UHGV-0146326_20	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0146326_20	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0146326_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0146326_21	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0146326_21	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0146326_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0146326_21	Structural annotation	TIGR01725	NA	NA
UHGV-0146326_22	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0146326_22	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0146326_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0146326_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0146326_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0146326_23	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0146326_23	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0146326_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0146326_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0146326_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0146326_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0146326_24	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0146326_24	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0146326_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146326_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146326_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0146326_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146326_25	PHROG	phrog_16951	NA	unknown function
UHGV-0146326_25	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0146326_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0146326_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0146326_26	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0146326_26	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0146326_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0146326_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0146326_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0146326_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0146326_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0146326_27	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0146326_27	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0146326_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0146326_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0146326_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146326_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0146326_28	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0146326_28	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0146326_28	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-0146326_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0146326_28	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0146326_28	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0146326_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0146326_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0146326_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146326_29	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0146326_29	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0146326_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146326_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146326_29	Structural annotation	PF05766	NA	NA
UHGV-0146326_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146326_30	PHROG	phrog_12862	NA	unknown function
UHGV-0146326_30	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-0146326_30	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0146326_30	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0146326_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146326_30	COG	COG0863	DNA modification methylase	NA
UHGV-0146326_30	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0146326_31	PHROG	phrog_11237	NA	unknown function
UHGV-0146326_31	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0146326_31	Structural annotation	TIGR01636	NA	NA
UHGV-0146326_32	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0146326_32	UniRef90	UniRef90_A0A498CN80	Class I SAM-dependent methyltransferase	NA
UHGV-0146326_32	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0146326_32	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0146326_32	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0146326_32	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0146326_32	Structural annotation	PF05148, MF_01057, NF011527, COG4123	NA	NA
UHGV-0146326_33	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146326_33	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0146326_33	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0146326_34	PHROG	phrog_24518	NA	unknown function
UHGV-0146326_34	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0146326_35	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0146326_38	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0146326_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146326_38	eggNOG-mapper	537013.CLOSTMETH_02010	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146326_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146326_38	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0146326_39	PHROG	phrog_15609	NA	unknown function
UHGV-0146326_39	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0146326_39	Pfam	PF11300	NA	DUF3102
UHGV-0146326_39	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0146326_40	PHROG	phrog_8470	NA	unknown function
UHGV-0146326_40	UniRef90	UniRef90_A0A238ZSA1	PcfJ-like protein	NA
UHGV-0146326_40	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0146326_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0146326_40	Structural annotation	PF14284	NA	NA
UHGV-0146326_41	PHROG	phrog_7445	NA	unknown function
UHGV-0146326_41	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0146326_41	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0146326_41	Structural annotation	PF14058	NA	NA
UHGV-0146326_42	PHROG	phrog_824	NA	unknown function
UHGV-0146326_42	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0146326_42	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0146326_42	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0146326_42	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0146326_46	PHROG	phrog_22040	NA	unknown function
UHGV-0146326_46	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0146326_49	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146326_49	PHROG	phrog_18750	NA	unknown function
UHGV-0146326_49	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0146326_49	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0146326_49	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0146326_49	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0146326_49	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0146326_51	PHROG	phrog_6058	NA	unknown function
UHGV-0146326_51	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0146326_52	UniRef90	UniRef90_R6I666	Putative cro repressor	NA
UHGV-0146326_52	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0146326_52	Pfam	PF05339	NA	DUF739
UHGV-0146326_52	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0146326_52	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0146326_53	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146326_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146326_53	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-0146326_53	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0146326_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146326_53	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146326_53	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146326_53	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0146326_55	KOfam	K14059	int; integrase	NA
UHGV-0146326_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0146326_55	UniRef90	UniRef90_A0A7K4BXA9	Site-specific integrase	NA
UHGV-0146326_55	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0146326_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146326_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146326_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0146326_55	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA