UHGV-0146333

Genome information

Genome length 34,457 bps

CDS count 48

Completeness 82.50% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146333
vOTU ID	vOTU-021788
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_432557
BioSample	SAMN05545043
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.46
Jumbo phage	No

Genome content
Genome length	34,457 bps
GC content	49.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.12%
Average CDS length	687.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146333_1	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146333_1	UniRef90	UniRef90_A0A2V2D727	NA	NA
UHGV-0146333_1	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-0146333_1	Pfam	PF10926	NA	DUF2800
UHGV-0146333_1	COG	COG2887	RecB family exonuclease	NA
UHGV-0146333_2	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146333_2	UniRef90	UniRef90_UPI000E4307C9	NA	NA
UHGV-0146333_2	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-0146333_2	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0146333_2	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0146333_3	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0146333_3	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0146333_3	UniRef90	UniRef90_A0A174XFA1	DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains	NA
UHGV-0146333_3	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-0146333_3	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0146333_3	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0146333_3	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0146333_4	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0146333_4	UniRef90	UniRef90_A0A174X6U4	Putative P-loop ATPase	NA
UHGV-0146333_4	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-0146333_4	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0146333_4	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0146333_4	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0146333_5	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146333_5	UniRef90	UniRef90_A0A174K5Q6	VRR-NUC domain-containing protein	NA
UHGV-0146333_5	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-0146333_5	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0146333_6	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0146333_6	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0146333_6	UniRef90	UniRef90_A0A174X759	DNA/RNA helicase, superfamily II, SNF2 family	NA
UHGV-0146333_6	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-0146333_6	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0146333_6	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0146333_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0146333_6	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0146333_6	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0146333_7	Structural annotation	PF16535, NF011863	NA	NA
UHGV-0146333_8	Structural annotation	PF11331, TIGR02098	NA	NA
UHGV-0146333_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146333_15	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0146333_15	Structural annotation	PF02996	NA	NA
UHGV-0146333_16	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0146333_16	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0146333_16	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0146333_16	Structural annotation	PF16677	NA	NA
UHGV-0146333_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146333_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0146333_17	UniRef90	UniRef90_A0A174WYX0	Phage terminase, large subunit	NA
UHGV-0146333_17	eggNOG-mapper	1298920.KI911353_gene4856	Phage terminase, large subunit, PBSX family	NA
UHGV-0146333_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146333_17	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0146333_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146333_18	UniRef90	UniRef90_A0A174WUZ7	Phage minor capsid protein	NA
UHGV-0146333_18	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0146333_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146333_19	PHROG	phrog_25639	NA	unknown function
UHGV-0146333_19	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0146333_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146333_20	UniRef90	UniRef90_UPI001106A636	minor capsid protein	NA
UHGV-0146333_20	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0146333_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146333_20	COG	COG2369	NA	NA
UHGV-0146333_20	Structural annotation	PF06152	NA	NA
UHGV-0146333_23	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0146333_23	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0146333_24	PHROG	phrog_422	major head protein	head and packaging
UHGV-0146333_24	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0146333_24	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0146333_24	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0146333_25	PHROG	phrog_1378	NA	unknown function
UHGV-0146333_25	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0146333_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146333_26	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0146333_27	PHROG	phrog_8710	NA	unknown function
UHGV-0146333_27	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0146333_27	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0146333_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146333_28	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0146333_29	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0146333_29	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0146333_29	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0146333_29	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0146333_29	Structural annotation	PF12691	NA	NA
UHGV-0146333_30	PHROG	phrog_820	major tail protein	tail
UHGV-0146333_30	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0146333_30	COG	COG5492	NA	NA
UHGV-0146333_30	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146333_31	PHROG	phrog_8300	NA	unknown function
UHGV-0146333_31	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0146333_31	Structural annotation	PF06854	NA	NA
UHGV-0146333_32	PHROG	phrog_8355	NA	unknown function
UHGV-0146333_32	UniRef90	UniRef90_UPI001A9A799B	Gp15 family bacteriophage protein	NA
UHGV-0146333_32	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0146333_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146333_32	Structural annotation	PF06854	NA	NA
UHGV-0146333_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0146333_33	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0146333_33	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0146333_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0146333_33	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0146333_34	PHROG	phrog_1194	NA	unknown function
UHGV-0146333_34	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0146333_34	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0146333_35	PHROG	phrog_13879	NA	unknown function
UHGV-0146333_35	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0146333_35	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0146333_36	PHROG	phrog_18725	NA	unknown function
UHGV-0146333_36	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0146333_37	PHROG	phrog_30220	NA	unknown function
UHGV-0146333_37	eggNOG-mapper	585501.HMPREF6123_0821	NA	NA
UHGV-0146333_37	Structural annotation	PF20620, NF038128	NA	NA
UHGV-0146333_40	PHROG	phrog_19280	NA	unknown function
UHGV-0146333_40	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0146333_40	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0146333_40	Structural annotation	PF10651	NA	NA
UHGV-0146333_43	PHROG	phrog_1009	NA	unknown function
UHGV-0146333_43	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0146333_43	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0146333_44	PHROG	phrog_1129	holin	lysis
UHGV-0146333_44	UniRef90	UniRef90_A0A416MDZ9	Enolase	NA
UHGV-0146333_44	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0146333_44	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0146333_44	Structural annotation	PF06946	NA	NA
UHGV-0146333_45	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0146333_45	PHROG	phrog_1794	amidase	lysis
UHGV-0146333_45	UniRef90	UniRef90_A0A6N2YCV4	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-0146333_45	eggNOG-mapper	1298920.KI911353_gene2668	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0146333_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0146333_45	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0146333_45	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0146333_45	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF033202, COG5632	NA	NA
UHGV-0146333_46	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0146333_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146333_46	UniRef90	UniRef90_A0A174NHN3	Transcriptional regulator, HTH-type	NA
UHGV-0146333_46	eggNOG-mapper	1121289.JHVL01000006_gene2911	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146333_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146333_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0146333_46	Structural annotation	PF12844, NF041951, COG1476	NA	NA