UHGV-0146358

Genome information

Genome length 37,675 bps

CDS count 58

Completeness 92.27% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146358
vOTU ID	vOTU-010304
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_417929
BioSample	SAMN05578585
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.48
Jumbo phage	No

Genome content
Genome length	37,675 bps
GC content	40.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.72%
Average CDS length	604.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146358_1	KOfam	K14059	int; integrase	NA
UHGV-0146358_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0146358_1	UniRef90	UniRef90_UPI001C37EA58	site-specific integrase	NA
UHGV-0146358_1	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-0146358_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146358_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146358_1	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0146358_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146358_1	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0146358_2	eggNOG-mapper	1499683.CCFF01000014_gene3659	NA	NA
UHGV-0146358_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0146358_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146358_4	UniRef90	UniRef90_G1VRW4	HTH cro/C1-type domain-containing protein	NA
UHGV-0146358_4	eggNOG-mapper	999413.HMPREF1094_02044	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146358_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146358_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146358_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0146358_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0146358_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0146358_6	UniRef90	UniRef90_UPI000E49576D	phage antirepressor KilAC domain-containing protein	NA
UHGV-0146358_6	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-0146358_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0146358_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0146358_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0146358_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0146358_10	PHROG	phrog_2113	NA	unknown function
UHGV-0146358_10	UniRef90	UniRef90_A0A847CHZ4	HTH domain-containing protein	NA
UHGV-0146358_10	eggNOG-mapper	1160721.RBI_I00213	NA	NA
UHGV-0146358_14	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146358_14	UniRef90	UniRef90_A0A3A6DAQ7	Phage recombination protein Bet	NA
UHGV-0146358_14	eggNOG-mapper	86416.Clopa_4307	Phage recombination protein Bet	NA
UHGV-0146358_14	Pfam	PF03837	RecT family	RecT
UHGV-0146358_14	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0146358_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0146358_14	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0146358_15	PHROG	phrog_6244	NA	unknown function
UHGV-0146358_15	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0146358_16	Structural annotation	PF16454, NF007974	NA	NA
UHGV-0146358_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146358_17	UniRef90	UniRef90_UPI000E4EB16B	NA	NA
UHGV-0146358_17	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0146358_17	Pfam	PF06356	NA	DUF1064
UHGV-0146358_17	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0146358_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0146358_19	UniRef90	UniRef90_UPI0004660BB2	conserved phage C-terminal domain-containing protein	NA
UHGV-0146358_19	eggNOG-mapper	411470.RUMGNA_02197	phage replisome	NA
UHGV-0146358_19	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0146358_20	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0146358_22	UniRef90	UniRef90_R6VZG6	DNA methylase	NA
UHGV-0146358_23	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146358_23	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0146358_23	UniRef90	UniRef90_G1VS51	Methyltransferase	NA
UHGV-0146358_23	eggNOG-mapper	1123315.AUIP01000014_gene1936	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0146358_23	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0146358_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146358_23	COG	COG0863	DNA modification methylase	NA
UHGV-0146358_23	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0146358_25	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0146358_25	UniRef90	UniRef90_A0A099I3S3	Methyltransferase	NA
UHGV-0146358_25	eggNOG-mapper	908340.HMPREF9406_3501	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0146358_25	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0146358_25	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0146358_25	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0146358_25	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0146358_26	PHROG	phrog_98	NA	unknown function
UHGV-0146358_26	UniRef90	UniRef90_G1VS54	YopX domain-containing protein	NA
UHGV-0146358_26	eggNOG-mapper	1499683.CCFF01000017_gene2588	YopX protein	NA
UHGV-0146358_26	Pfam	PF09643	YopX protein	YopX
UHGV-0146358_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0146358_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0146358_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146358_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146358_27	UniRef90	UniRef90_A0A099I4V0	Single-stranded DNA-binding protein	NA
UHGV-0146358_27	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0146358_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146358_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146358_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146358_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146358_27	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0146358_28	PHROG	phrog_4400	NA	unknown function
UHGV-0146358_28	eggNOG-mapper	886882.PPSC2_p0514	NA	NA
UHGV-0146358_28	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0146358_29	PHROG	phrog_2776	NA	unknown function
UHGV-0146358_29	eggNOG-mapper	697329.Rumal_3412	NA	NA
UHGV-0146358_29	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0146358_31	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-0146358_33	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0146358_33	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0146358_33	UniRef90	UniRef90_G1VRZ3	N6_Mtase domain-containing protein	NA
UHGV-0146358_33	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0146358_33	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0146358_33	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0146358_33	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0146358_33	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0146358_35	PHROG	phrog_1233	NA	unknown function
UHGV-0146358_35	eggNOG-mapper	1232449.BAHV02000018_gene1535	NA	NA
UHGV-0146358_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0146358_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0146358_36	UniRef90	UniRef90_UPI001C392722	terminase small subunit	NA
UHGV-0146358_36	eggNOG-mapper	428127.EUBDOL_01230	terminase (Small subunit)	NA
UHGV-0146358_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0146358_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0146358_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0146358_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0146358_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146358_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0146358_37	UniRef90	UniRef90_U5F7S3	PBSX family phage terminase, large subunit	NA
UHGV-0146358_37	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0146358_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146358_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0146358_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146358_38	UniRef90	UniRef90_A0A1C6JYD4	Phage portal protein, putative, A118 family	NA
UHGV-0146358_38	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0146358_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146358_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146358_39	UniRef90	UniRef90_A0A6B1RQY7	Capsid protein	NA
UHGV-0146358_39	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-0146358_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146358_39	Structural annotation	PF06152	NA	NA
UHGV-0146358_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0146358_42	eggNOG-mapper	552396.HMPREF0863_01634	NA	NA
UHGV-0146358_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0146358_43	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-0146358_43	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0146358_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0146358_44	PHROG	phrog_1378	NA	unknown function
UHGV-0146358_44	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0146358_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146358_45	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0146358_46	PHROG	phrog_8710	NA	unknown function
UHGV-0146358_46	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-0146358_46	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0146358_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146358_47	UniRef90	UniRef90_UPI001C3956D2	minor capsid protein	NA
UHGV-0146358_47	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-0146358_48	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0146358_48	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-0146358_48	eggNOG-mapper	552396.HMPREF0863_01640	NA	NA
UHGV-0146358_48	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0146358_48	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0146358_49	PHROG	phrog_820	major tail protein	tail
UHGV-0146358_49	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-0146358_49	COG	COG5492	NA	NA
UHGV-0146358_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146358_50	PHROG	phrog_8300	NA	unknown function
UHGV-0146358_50	eggNOG-mapper	1232449.BAHV02000018_gene1519	NA	NA
UHGV-0146358_50	Structural annotation	PF06896	NA	NA
UHGV-0146358_51	PHROG	phrog_8355	NA	unknown function
UHGV-0146358_51	UniRef90	UniRef90_A0A4R3TDU8	Bacteriophage Gp15 protein	NA
UHGV-0146358_51	eggNOG-mapper	552396.HMPREF0863_01643	NA	NA
UHGV-0146358_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146358_52	PHROG	phrog_37487	NA	unknown function
UHGV-0146358_52	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-0146358_52	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-0146358_52	COG	COG1511	NA	NA
UHGV-0146358_53	PHROG	phrog_1194	NA	unknown function
UHGV-0146358_53	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-0146358_53	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0146358_54	PHROG	phrog_2566	NA	unknown function
UHGV-0146358_54	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0146358_55	PHROG	phrog_1401	NA	unknown function
UHGV-0146358_55	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0146358_55	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0146358_55	Structural annotation	PF07761	NA	NA
UHGV-0146358_56	PHROG	phrog_16267	NA	unknown function
UHGV-0146358_56	UniRef90	UniRef90_UPI0008EB4AF8	tail fiber domain-containing protein	NA
UHGV-0146358_56	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0146358_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0146358_56	COG	COG4926	Phage-related protein	NA
UHGV-0146358_56	Structural annotation	PF05113, PF03944, NF033848, NF033675, COG3500	NA	NA
UHGV-0146358_58	PHROG	phrog_4105	NA	unknown function
UHGV-0146358_58	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA