UHGV-0146405

Genome information

Genome length 35,717 bps

CDS count 65

Completeness 100.00% (complete)

geNomad score 0.9453

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146405
vOTU ID	vOTU-046088
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_408407
BioSample	SAMN05414940
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9453
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.48
Jumbo phage	No

Genome content
Genome length	35,717 bps
GC content	67.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.40%
Average CDS length	499.48 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146405_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146405_3	eggNOG-mapper	1125712.HMPREF1316_1526	NA	NA
UHGV-0146405_3	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-0146405_5	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146405_5	UniRef90	UniRef90_UPI001E5D2252	HNH endonuclease	NA
UHGV-0146405_5	eggNOG-mapper	521003.COLINT_02336	HNH nucleases	NA
UHGV-0146405_5	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146405_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146405_5	Structural annotation	PF01844	NA	NA
UHGV-0146405_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0146405_7	UniRef90	UniRef90_UPI001305466D	ATP-binding protein	NA
UHGV-0146405_7	eggNOG-mapper	521095.Apar_0576	Terminase	NA
UHGV-0146405_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146405_7	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0146405_8	PHROG	phrog_104	portal protein	head and packaging
UHGV-0146405_8	UniRef90	UniRef90_A0A3D1U9I6	Phage portal protein (Fragment)	NA
UHGV-0146405_8	eggNOG-mapper	521095.Apar_0577	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0146405_8	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0146405_8	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0146405_9	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0146405_9	UniRef90	UniRef90_R7BP20	CdiA_C domain-containing protein	NA
UHGV-0146405_9	eggNOG-mapper	521003.COLINT_02341	NA	NA
UHGV-0146405_10	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0146405_10	UniRef90	UniRef90_A0A412EZF6	NA	NA
UHGV-0146405_10	eggNOG-mapper	521095.Apar_0579	NA	NA
UHGV-0146405_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0146405_11	UniRef90	UniRef90_A0A261EXY0	Head protein	NA
UHGV-0146405_11	eggNOG-mapper	1437610.BREU_1384	Phage capsid family	NA
UHGV-0146405_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146405_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146405_11	COG	COG0577	ABC-type antimicrobial peptide transport system, permease component	NA
UHGV-0146405_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146405_13	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0146405_13	UniRef90	UniRef90_UPI00164FAC50	Gp19/Gp15/Gp42 family protein	NA
UHGV-0146405_13	eggNOG-mapper	521095.Apar_0581	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0146405_13	Pfam	PF09355	NA	Phage_Gp19
UHGV-0146405_14	PHROG	phrog_501	head closure Hc1	connector
UHGV-0146405_14	UniRef90	UniRef90_A0A5C7ERG1	Head-tail adaptor protein	NA
UHGV-0146405_14	eggNOG-mapper	521003.COLINT_02346	NA	NA
UHGV-0146405_14	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0146405_15	PHROG	phrog_387	neck protein	connector
UHGV-0146405_16	Structural annotation	PF06141	NA	NA
UHGV-0146405_17	PHROG	phrog_117	major tail protein	tail
UHGV-0146405_17	UniRef90	UniRef90_UPI001107177F	phage tail protein	NA
UHGV-0146405_17	eggNOG-mapper	521003.COLINT_02349	domain, Protein	NA
UHGV-0146405_17	COG	COG5492	NA	NA
UHGV-0146405_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0146405_19	Structural annotation	PF17318	NA	NA
UHGV-0146405_20	PHROG	phrog_35723	NA	unknown function
UHGV-0146405_20	UniRef90	UniRef90_UPI00189E8ED0	tape measure protein	NA
UHGV-0146405_20	eggNOG-mapper	521095.Apar_0588	nuclear chromosome segregation	NA
UHGV-0146405_20	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0146405_20	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0146405_20	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0146405_21	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0146405_21	eggNOG-mapper	78345.BMERY_0869	NA	NA
UHGV-0146405_21	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0146405_22	PHROG	phrog_538	minor tail protein	tail
UHGV-0146405_22	UniRef90	UniRef90_UPI001C2424C5	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0146405_22	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0146405_22	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0146405_22	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0146405_23	Structural annotation	PF20622	NA	NA
UHGV-0146405_24	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0146405_24	eggNOG-mapper	566552.BIFCAT_00854	outer membrane autotransporter barrel domain protein	NA
UHGV-0146405_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0146405_24	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0146405_25	PHROG	phrog_819	tail protein	tail
UHGV-0146405_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0146405_26	eggNOG-mapper	521095.Apar_0590	NA	NA
UHGV-0146405_27	PHROG	phrog_9994	NA	unknown function
UHGV-0146405_27	UniRef90	UniRef90_UPI00189FD7EF	RICIN domain-containing protein	NA
UHGV-0146405_27	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-0146405_28	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0146405_32	KOfam	K14059	int; integrase	NA
UHGV-0146405_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0146405_32	UniRef90	UniRef90_A0A3G9JWP5	Integrase	NA
UHGV-0146405_32	eggNOG-mapper	1504822.CCNO01000016_gene275	DNA integration	NA
UHGV-0146405_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146405_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146405_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146405_32	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0146405_33	eggNOG-mapper	1306406.ASHX01000002_gene5056	to chymotrypsin. May be specialized for the degradation of chitin- linked proteins. Has a primary specificity for large aliphatic or aromatic amino acids	NA
UHGV-0146405_33	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0146405_33	COG	COG3979	Chitodextrinase	NA
UHGV-0146405_34	PHROG	phrog_30034	NA	unknown function
UHGV-0146405_34	UniRef90	UniRef90_R5HAU4	Carbohydrate binding domain protein	NA
UHGV-0146405_34	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0146405_34	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0146405_35	PHROG	phrog_4105	NA	unknown function
UHGV-0146405_35	eggNOG-mapper	218140.BPSY_0948	NA	NA
UHGV-0146405_36	PHROG	phrog_443	holin	lysis
UHGV-0146405_36	UniRef90	UniRef90_UPI000A26D838	holin	NA
UHGV-0146405_36	eggNOG-mapper	553184.ATORI0001_1165	Putative lactococcus lactis phage r1t holin	NA
UHGV-0146405_36	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0146405_36	Structural annotation	PF16945	NA	NA
UHGV-0146405_38	PHROG	phrog_14030	NA	unknown function
UHGV-0146405_38	UniRef90	UniRef90_A0A087E4C5	Phage lysin	NA
UHGV-0146405_38	eggNOG-mapper	218140.BPSY_0951	NLP P60 protein	NA
UHGV-0146405_38	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0146405_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0146405_38	Structural annotation	PF05382, COG3942	NA	NA
UHGV-0146405_40	KOfam	K14059	int; integrase	NA
UHGV-0146405_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0146405_40	UniRef90	UniRef90_UPI000E3DECA9	tyrosine-type recombinase/integrase	NA
UHGV-0146405_40	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-0146405_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146405_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146405_40	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0146405_41	UniRef90	UniRef90_A0A3N0ICX9	Cell filamentation protein Fic	NA
UHGV-0146405_41	eggNOG-mapper	521003.COLINT_02300	Virulence protein RhuM family	NA
UHGV-0146405_41	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0146405_41	COG	COG3943	NA	NA
UHGV-0146405_41	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0146405_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146405_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146405_42	UniRef90	UniRef90_C7N6S8	Predicted transcriptional regulator	NA
UHGV-0146405_42	eggNOG-mapper	471855.Shel_15940	sequence-specific DNA binding	NA
UHGV-0146405_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146405_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0146405_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0146405_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0146405_43	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0146405_43	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-0146405_43	eggNOG-mapper	1504822.CCNO01000015_gene589	SOS response	NA
UHGV-0146405_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0146405_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0146405_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0146405_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146405_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146405_44	UniRef90	UniRef90_UPI001E49C890	helix-turn-helix domain-containing protein	NA
UHGV-0146405_44	eggNOG-mapper	626523.GCWU000342_01801	Transcriptional regulator, AbrB family	NA
UHGV-0146405_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146405_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0146405_44	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0146405_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0146405_46	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0146405_46	UniRef90	UniRef90_UPI000E3CDD67	phage antirepressor KilAC domain-containing protein	NA
UHGV-0146405_46	eggNOG-mapper	78346.BRUM_0415	BRO family, N-terminal domain	NA
UHGV-0146405_46	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0146405_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0146405_46	COG	COG3617	Prophage antirepressor	NA
UHGV-0146405_46	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0146405_50	UniRef90	UniRef90_A0A5C5BRF6	DNA-binding protein	NA
UHGV-0146405_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146405_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146405_52	UniRef90	UniRef90_UPI000E3CCC4C	single-stranded DNA-binding protein	NA
UHGV-0146405_52	eggNOG-mapper	1203602.HMPREF1527_01126	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0146405_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146405_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146405_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146405_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146405_52	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0146405_53	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0146405_53	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0146405_56	eggNOG-mapper	521003.COLINT_02330	NA	NA
UHGV-0146405_61	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0146405_61	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0146405_61	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0146405_64	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0146405_64	UniRef90	UniRef90_UPI000E3BC5A6	NA	NA
UHGV-0146405_64	Pfam	PF11753	NA	DUF3310
UHGV-0146405_64	Structural annotation	PF11753	NA	NA
UHGV-0146405_65	KOfam	K14059	int; integrase	NA
UHGV-0146405_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0146405_65	UniRef90	UniRef90_UPI000E3C8C88	site-specific integrase	NA
UHGV-0146405_65	eggNOG-mapper	553184.ATORI0001_0862	Belongs to the 'phage' integrase family	NA
UHGV-0146405_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146405_65	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146405_65	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA