UHGV-0146418

Genome information

Genome length 40,092 bps

CDS count 55

Completeness 83.05% (medium-quality)

geNomad score 0.9506

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146418
vOTU ID	vOTU-015640
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_428768
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9506
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.15
Jumbo phage	No

Genome content
Genome length	40,092 bps
GC content	46.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	87.54%
Average CDS length	641.51 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146418_1	UniRef90	UniRef90_A0A1G8AMJ5	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0146418_1	eggNOG-mapper	469610.HMPREF0189_02290	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0146418_1	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0146418_1	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0146418_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0146418_3	PHROG	phrog_894	endolysin	lysis
UHGV-0146418_3	UniRef90	UniRef90_R6AQ69	Peptidase M15	NA
UHGV-0146418_3	eggNOG-mapper	1121423.JONT01000035_gene915	NA	NA
UHGV-0146418_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0146418_3	COG	COG3108	NA	NA
UHGV-0146418_3	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0146418_5	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0146418_5	Structural annotation	PF16083, TIGR01594	NA	NA
UHGV-0146418_6	KOfam	K14059	int; integrase	NA
UHGV-0146418_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0146418_6	UniRef90	UniRef90_UPI000DE844E1	tyrosine-type recombinase/integrase	NA
UHGV-0146418_6	eggNOG-mapper	742821.HMPREF9464_01814	Belongs to the 'phage' integrase family	NA
UHGV-0146418_6	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0146418_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146418_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146418_6	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0146418_7	UniRef90	UniRef90_H0F6V0	Putative phage tail fiber protein	NA
UHGV-0146418_7	eggNOG-mapper	477184.KYC_12803	NA	NA
UHGV-0146418_9	eggNOG-mapper	679935.Alfi_0763	NA	NA
UHGV-0146418_10	PHROG	phrog_15547	NA	unknown function
UHGV-0146418_10	UniRef90	UniRef90_UPI00196180A7	tail fiber protein	NA
UHGV-0146418_10	eggNOG-mapper	742823.HMPREF9465_00202	tail collar domain protein	NA
UHGV-0146418_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0146418_11	PHROG	phrog_48	tail protein	tail
UHGV-0146418_11	UniRef90	UniRef90_K1KKI1	Phage tail protein I	NA
UHGV-0146418_11	eggNOG-mapper	742823.HMPREF9465_00204	Tail protein I	NA
UHGV-0146418_11	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0146418_11	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0146418_11	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0146418_11	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0146418_12	PHROG	phrog_6	baseplate protein	tail
UHGV-0146418_12	UniRef90	UniRef90_UPI00195FE83E	baseplate J/gp47 family protein	NA
UHGV-0146418_12	eggNOG-mapper	742823.HMPREF9465_00205	Baseplate J-like protein	NA
UHGV-0146418_12	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0146418_12	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0146418_12	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0146418_13	KOfam	K06903	NA	NA
UHGV-0146418_13	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0146418_13	UniRef90	UniRef90_UPI00195F33D1	GPW/gp25 family protein	NA
UHGV-0146418_13	eggNOG-mapper	742823.HMPREF9465_00206	GPW Gp25 family protein	NA
UHGV-0146418_13	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0146418_13	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0146418_13	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0146418_14	PHROG	phrog_76	tail protein	tail
UHGV-0146418_14	UniRef90	UniRef90_UPI00097DFDBF	phage tail protein	NA
UHGV-0146418_14	eggNOG-mapper	742823.HMPREF9465_00207	Phage P2 GpU	NA
UHGV-0146418_14	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0146418_14	COG	COG3499	NA	NA
UHGV-0146418_14	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0146418_15	PHROG	phrog_9992	baseplate assembly protein	tail
UHGV-0146418_15	UniRef90	UniRef90_UPI001961A54A	phage baseplate assembly protein V	NA
UHGV-0146418_15	eggNOG-mapper	742823.HMPREF9465_00208	Baseplate assembly protein	NA
UHGV-0146418_15	Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
UHGV-0146418_15	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0146418_15	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0146418_15	Structural annotation	PF04717, PF11280, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0146418_16	KOfam	K06905	NA	NA
UHGV-0146418_16	PHROG	phrog_52	tail protein	tail
UHGV-0146418_16	UniRef90	UniRef90_A0A3B9Q8K7	Late control D family protein	NA
UHGV-0146418_16	eggNOG-mapper	742823.HMPREF9465_00209	Late control D family protein	NA
UHGV-0146418_16	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0146418_16	COG	COG3500	NA	NA
UHGV-0146418_16	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0146418_17	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0146418_17	UniRef90	UniRef90_UPI00138FB70A	phage tail tape measure protein	NA
UHGV-0146418_17	eggNOG-mapper	742823.HMPREF9465_00211	Phage-related minor tail protein	NA
UHGV-0146418_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0146418_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0146418_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0146418_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0146418_20	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0146418_20	UniRef90	UniRef90_UPI001C3009A9	phage tail assembly protein	NA
UHGV-0146418_20	eggNOG-mapper	742823.HMPREF9465_00212	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0146418_20	Structural annotation	PF10109	NA	NA
UHGV-0146418_21	KOfam	K06908	NA	NA
UHGV-0146418_21	PHROG	phrog_55	head closure	connector
UHGV-0146418_21	UniRef90	UniRef90_UPI00097DB7F7	phage major tail tube protein	NA
UHGV-0146418_21	eggNOG-mapper	742823.HMPREF9465_00213	major tail tube protein	NA
UHGV-0146418_21	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0146418_21	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0146418_21	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0146418_22	KOfam	K06907	NA	NA
UHGV-0146418_22	PHROG	phrog_23	tail sheath	tail
UHGV-0146418_22	UniRef90	UniRef90_A0A3B9Q8J5	Phage tail protein	NA
UHGV-0146418_22	eggNOG-mapper	742823.HMPREF9465_00214	tail sheath protein	NA
UHGV-0146418_22	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0146418_22	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0146418_23	PHROG	phrog_4089	NA	unknown function
UHGV-0146418_24	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0146418_24	eggNOG-mapper	742823.HMPREF9465_00216	NA	NA
UHGV-0146418_24	Structural annotation	PF06141	NA	NA
UHGV-0146418_25	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0146418_25	UniRef90	UniRef90_UPI0007170A12	phage tail protein	NA
UHGV-0146418_25	eggNOG-mapper	936573.HMPREF1147_1723	Prophage minor tail protein Z (GPZ)	NA
UHGV-0146418_25	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0146418_25	Structural annotation	PF06763	NA	NA
UHGV-0146418_26	PHROG	phrog_2551	minor tail protein	tail
UHGV-0146418_26	UniRef90	UniRef90_A0A098AYU8	ATP-binding sugar transporter from pro-phage	NA
UHGV-0146418_26	eggNOG-mapper	1235793.C809_02665	ATP-binding sugar transporter from pro-phage	NA
UHGV-0146418_26	Structural annotation	PF13856, TIGR01563, COG5614	NA	NA
UHGV-0146418_27	KOfam	K06904	NA	NA
UHGV-0146418_27	PHROG	phrog_617	major head protein	head and packaging
UHGV-0146418_27	UniRef90	UniRef90_A0A3B9Q986	Phage major capsid protein	NA
UHGV-0146418_27	eggNOG-mapper	1266925.JHVX01000006_gene2064	Phage capsid family	NA
UHGV-0146418_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0146418_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146418_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146418_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0146418_27	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-0146418_28	PHROG	phrog_21	portal protein	head and packaging
UHGV-0146418_28	UniRef90	UniRef90_UPI00195FFC5C	phage portal protein	NA
UHGV-0146418_28	eggNOG-mapper	1266925.JHVX01000006_gene2063	Phage portal protein, lambda family	NA
UHGV-0146418_28	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0146418_28	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0146418_28	COG	COG5511	Phage capsid protein	NA
UHGV-0146418_28	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0146418_29	PHROG	phrog_5774	head-tail joining	connector
UHGV-0146418_29	eggNOG-mapper	1266925.JHVX01000006_gene2062	NA	NA
UHGV-0146418_29	Structural annotation	PF14545, NF033814	NA	NA
UHGV-0146418_30	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0146418_30	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0146418_30	UniRef90	UniRef90_A0A3B9Q8U5	Terminase	NA
UHGV-0146418_30	eggNOG-mapper	626418.bglu_1g27340	terminase GpA	NA
UHGV-0146418_30	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0146418_30	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0146418_30	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0146418_30	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0146418_31	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0146418_31	UniRef90	UniRef90_UPI001962216B	MarR family transcriptional regulator	NA
UHGV-0146418_31	eggNOG-mapper	339670.Bamb_1878	transposase activity	NA
UHGV-0146418_31	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0146418_31	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0146418_33	PHROG	phrog_16524	NA	unknown function
UHGV-0146418_33	UniRef90	UniRef90_A0A3C1DAP7	T5orf172 domain-containing protein	NA
UHGV-0146418_33	eggNOG-mapper	877420.ATVW01000028_gene181	NA	NA
UHGV-0146418_33	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0146418_33	Structural annotation	PF18755, PF10544	NA	NA
UHGV-0146418_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146418_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0146418_34	UniRef90	UniRef90_K1JKR6	Methyltransferase	NA
UHGV-0146418_34	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0146418_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0146418_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0146418_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146418_34	COG	COG0863	DNA modification methylase	NA
UHGV-0146418_34	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0146418_37	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0146418_37	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0146418_37	UniRef90	UniRef90_A0A6L6YKY2	NA	NA
UHGV-0146418_37	eggNOG-mapper	765910.MARPU_09580	Phage plasmid primase P4 family	NA
UHGV-0146418_37	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0146418_37	Pfam	PF19263	NA	DUF5906
UHGV-0146418_37	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0146418_37	Structural annotation	PF05272, PF03288, MF_04000, NF011296, TIGR00646, COG4643, COG3378	NA	NA
UHGV-0146418_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146418_40	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0146418_40	UniRef90	UniRef90_A0A3D4G8D5	HTH cro/C1-type domain-containing protein	NA
UHGV-0146418_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146418_40	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0146418_40	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0146418_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146418_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146418_50	UniRef90	UniRef90_A0A3D3SFE9	Single-stranded DNA-binding protein	NA
UHGV-0146418_50	eggNOG-mapper	1121939.L861_08395	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0146418_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146418_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146418_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146418_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146418_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0146418_52	PHROG	phrog_30113	NA	unknown function
UHGV-0146418_52	UniRef90	UniRef90_A0A8A4UWE5	NA	NA
UHGV-0146418_52	eggNOG-mapper	1203554.HMPREF1476_00218	NA	NA
UHGV-0146418_52	Pfam	PF12686	NA	DUF3800
UHGV-0146418_52	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-0146418_53	KOfam	K14059	int; integrase	NA
UHGV-0146418_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0146418_53	UniRef90	UniRef90_A0A6L6YIV8	NA	NA
UHGV-0146418_53	eggNOG-mapper	762966.HMPREF9439_01612	Belongs to the 'phage' integrase family	NA
UHGV-0146418_53	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0146418_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146418_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0146418_55	UniRef90	UniRef90_A0A844JUJ5	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0146418_55	eggNOG-mapper	469610.HMPREF0189_01240	NA	NA