UHGV-0146563

Genome information

Genome length 32,578 bps

CDS count 49

Completeness 83.28% (medium-quality)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146563
vOTU ID	vOTU-032667
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_431182
BioSample	SAMN05545041
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.01
Jumbo phage	No

Genome content
Genome length	32,578 bps
GC content	56.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	89.34%
Average CDS length	596.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146563_1	KOfam	K14059	int; integrase	NA
UHGV-0146563_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0146563_1	UniRef90	UniRef90_A0A3A6JT05	Integrase_SAM-like_N domain-containing protein (Fragment)	NA
UHGV-0146563_1	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0146563_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146563_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146563_2	PHROG	phrog_9116	tail protein	tail
UHGV-0146563_2	UniRef90	UniRef90_A0A3A6JU13	Collar domain-containing protein	NA
UHGV-0146563_2	eggNOG-mapper	665956.HMPREF1032_02935	PFAM Tail Collar domain protein	NA
UHGV-0146563_2	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0146563_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0146563_2	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0146563_3	PHROG	phrog_38190	NA	unknown function
UHGV-0146563_3	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0146563_4	PHROG	phrog_36886	NA	unknown function
UHGV-0146563_4	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0146563_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0146563_5	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0146563_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-0146563_6	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0146563_6	Structural annotation	PF21567	NA	NA
UHGV-0146563_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0146563_7	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0146563_7	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0146563_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0146563_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0146563_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0146563_8	UniRef90	UniRef90_A0A6N3F5Z2	Phage tail protein	NA
UHGV-0146563_8	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0146563_8	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0146563_9	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0146563_9	UniRef90	UniRef90_G9RTQ8	Tape measure domain-containing protein	NA
UHGV-0146563_9	eggNOG-mapper	665956.HMPREF1032_02942	Phage tail tape measure protein TP901	NA
UHGV-0146563_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0146563_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0146563_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0146563_9	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0146563_10	PHROG	phrog_706	NA	unknown function
UHGV-0146563_10	UniRef90	UniRef90_A0A6N3F5V9	Bacteriophage Gp15 protein	NA
UHGV-0146563_10	eggNOG-mapper	665956.HMPREF1032_02943	Bacteriophage Gp15 protein	NA
UHGV-0146563_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146563_10	Structural annotation	PF06854	NA	NA
UHGV-0146563_11	PHROG	phrog_4450	NA	unknown function
UHGV-0146563_11	Pfam	PF20378	NA	DUF6673
UHGV-0146563_11	Structural annotation	PF20378	NA	NA
UHGV-0146563_13	PHROG	phrog_820	major tail protein	tail
UHGV-0146563_13	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0146563_13	eggNOG-mapper	665956.HMPREF1032_02945	NA	NA
UHGV-0146563_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146563_14	PHROG	phrog_3266	tail completion	connector
UHGV-0146563_14	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0146563_14	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-0146563_14	Structural annotation	PF12691	NA	NA
UHGV-0146563_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146563_15	UniRef90	UniRef90_UPI0011061BF4	minor capsid protein	NA
UHGV-0146563_15	eggNOG-mapper	665956.HMPREF1032_02947	Minor capsid protein	NA
UHGV-0146563_15	Structural annotation	PF11114	NA	NA
UHGV-0146563_16	PHROG	phrog_3366	NA	unknown function
UHGV-0146563_16	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-0146563_16	Pfam	PF20536	NA	DUF6751
UHGV-0146563_16	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0146563_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146563_17	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0146563_18	UniRef90	UniRef90_A0A372V0W4	C2H2-type domain-containing protein	NA
UHGV-0146563_18	Pfam	PF00096	Zinc finger, C2H2 type	zf-C2H2
UHGV-0146563_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0146563_19	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0146563_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0146563_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0146563_20	UniRef90	UniRef90_A0A6N3F6J3	Phage minor structural protein GP20	NA
UHGV-0146563_20	eggNOG-mapper	665956.HMPREF1032_02952	Phage minor structural protein GP20	NA
UHGV-0146563_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0146563_20	Structural annotation	PF06810	NA	NA
UHGV-0146563_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146563_22	UniRef90	UniRef90_A0A6N3F6N5	Epidermal cell differentiation inhibitor	NA
UHGV-0146563_22	eggNOG-mapper	665956.HMPREF1032_02954	NA	NA
UHGV-0146563_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146563_22	COG	COG2369	NA	NA
UHGV-0146563_22	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0146563_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146563_23	UniRef90	UniRef90_G9RTS1	A118 family phage portal protein, putative	NA
UHGV-0146563_23	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0146563_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146563_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146563_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0146563_25	UniRef90	UniRef90_G9RTS3	PBSX family phage terminase, large subunit	NA
UHGV-0146563_25	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0146563_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0146563_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0146563_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146563_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146563_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0146563_26	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0146563_28	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0146563_28	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0146563_28	UniRef90	UniRef90_G9RN11	NGN domain-containing protein	NA
UHGV-0146563_28	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-0146563_28	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0146563_28	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0146563_28	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0146563_29	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0146563_29	UniRef90	UniRef90_A0A6I2UDS2	NA	NA
UHGV-0146563_29	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-0146563_29	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0146563_29	Structural annotation	PF11985	NA	NA
UHGV-0146563_30	PHROG	phrog_25462	NA	unknown function
UHGV-0146563_30	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0146563_30	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0146563_31	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-0146563_31	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-0146563_32	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0146563_32	UniRef90	UniRef90_G9RTS9	Mor domain-containing protein	NA
UHGV-0146563_32	eggNOG-mapper	665956.HMPREF1032_02963	Mor transcription activator family	NA
UHGV-0146563_32	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0146563_32	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0146563_32	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0146563_33	PHROG	phrog_286	NA	unknown function
UHGV-0146563_33	UniRef90	UniRef90_A0A372V3L1	Regulatory protein GemA	NA
UHGV-0146563_33	eggNOG-mapper	665956.HMPREF1032_02964	NA	NA
UHGV-0146563_33	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0146563_33	Structural annotation	PF06252	NA	NA
UHGV-0146563_34	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0146563_34	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-0146563_34	eggNOG-mapper	665956.HMPREF1032_02965	Bacteriophage Mu Gam like protein	NA
UHGV-0146563_34	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0146563_34	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0146563_34	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0146563_36	Structural annotation	PF06657	NA	NA
UHGV-0146563_38	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-0146563_38	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-0146563_40	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0146563_40	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0146563_40	UniRef90	UniRef90_A0A372V134	ATP-binding protein	NA
UHGV-0146563_40	eggNOG-mapper	552398.HMPREF0866_03135	AAA domain	NA
UHGV-0146563_40	Pfam	PF13401	AAA domain	AAA_22
UHGV-0146563_40	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0146563_40	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0146563_41	KOfam	K07497	K07497; putative transposase	NA
UHGV-0146563_41	PHROG	phrog_310	transposase	integration and excision
UHGV-0146563_41	UniRef90	UniRef90_A0A372V359	MerR family transcriptional regulator	NA
UHGV-0146563_41	eggNOG-mapper	552398.HMPREF0866_03136	Mu transposase, C-terminal	NA
UHGV-0146563_41	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0146563_41	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0146563_41	Pfam	PF00665	Integrase core domain	rve
UHGV-0146563_41	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0146563_41	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0146563_41	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0146563_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146563_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146563_46	UniRef90	UniRef90_A0A372UYM9	LexA family transcriptional regulator	NA
UHGV-0146563_46	eggNOG-mapper	665956.HMPREF1032_04076	Peptidase S24-like	NA
UHGV-0146563_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146563_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146563_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146563_46	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0146563_47	eggNOG-mapper	665956.HMPREF1032_02685	NA	NA
UHGV-0146563_48	eggNOG-mapper	665956.HMPREF1032_02687	NA	NA
UHGV-0146563_49	eggNOG-mapper	665956.HMPREF1032_03831	NA	NA