UHGV-0146648

Genome information

Genome length 36,025 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146648
vOTU ID	vOTU-008033
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_400021
BioSample	SAMN05356886
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.03
Jumbo phage	No

Genome content
Genome length	36,025 bps
GC content	41.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.76%
Average CDS length	542.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146648_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146648_1	PHROG	phrog_2742	endolysin	lysis
UHGV-0146648_1	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-0146648_1	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146648_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0146648_1	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0146648_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146648_1	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-0146648_2	PHROG	phrog_1129	holin	lysis
UHGV-0146648_2	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0146648_2	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0146648_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0146648_2	Structural annotation	PF06946	NA	NA
UHGV-0146648_3	PHROG	phrog_1009	NA	unknown function
UHGV-0146648_3	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0146648_3	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0146648_6	PHROG	phrog_13589	NA	unknown function
UHGV-0146648_6	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0146648_7	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0146648_8	PHROG	phrog_31538	NA	unknown function
UHGV-0146648_8	eggNOG-mapper	742740.HMPREF9474_02274	NA	NA
UHGV-0146648_9	PHROG	phrog_15594	NA	unknown function
UHGV-0146648_9	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0146648_9	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0146648_10	PHROG	phrog_1382	NA	unknown function
UHGV-0146648_10	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0146648_11	PHROG	phrog_12931	NA	unknown function
UHGV-0146648_11	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0146648_13	PHROG	phrog_25635	NA	unknown function
UHGV-0146648_13	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0146648_13	Structural annotation	PF20747, PF16990	NA	NA
UHGV-0146648_14	PHROG	phrog_538	minor tail protein	tail
UHGV-0146648_14	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0146648_14	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0146648_14	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0146648_14	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0146648_15	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0146648_15	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0146648_15	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0146648_15	COG	COG1511	NA	NA
UHGV-0146648_15	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0146648_16	PHROG	phrog_1633	NA	unknown function
UHGV-0146648_16	UniRef90	UniRef90_UPI00157064A0	NA	NA
UHGV-0146648_16	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0146648_16	Pfam	PF17318	NA	DUF5361
UHGV-0146648_16	Structural annotation	PF17318	NA	NA
UHGV-0146648_17	PHROG	phrog_1526	NA	unknown function
UHGV-0146648_17	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-0146648_17	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0146648_18	PHROG	phrog_117	major tail protein	tail
UHGV-0146648_18	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-0146648_18	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0146648_18	COG	COG5492	NA	NA
UHGV-0146648_18	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0146648_19	PHROG	phrog_123	tail terminator	connector
UHGV-0146648_19	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0146648_19	Structural annotation	PF06141	NA	NA
UHGV-0146648_20	PHROG	phrog_387	neck protein	connector
UHGV-0146648_20	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0146648_21	PHROG	phrog_501	head closure Hc1	connector
UHGV-0146648_21	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0146648_21	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0146648_22	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0146648_22	UniRef90	UniRef90_A0A1C5Y9F2	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0146648_22	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0146648_22	Pfam	PF09355	NA	Phage_Gp19
UHGV-0146648_22	Structural annotation	PF09355	NA	NA
UHGV-0146648_23	PHROG	phrog_36603	NA	unknown function
UHGV-0146648_24	PHROG	phrog_32396	NA	unknown function
UHGV-0146648_24	UniRef90	UniRef90_UPI001961D35B	phage major capsid protein	NA
UHGV-0146648_24	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-0146648_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146648_25	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0146648_25	UniRef90	UniRef90_A0A0X8USY7	Phage scaffold protein	NA
UHGV-0146648_25	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-0146648_25	Pfam	PF14265	NA	DUF4355
UHGV-0146648_25	Structural annotation	PF14265	NA	NA
UHGV-0146648_26	PHROG	phrog_17688	NA	unknown function
UHGV-0146648_26	UniRef90	UniRef90_R6SFU1	Putative phage terminase large subunit	NA
UHGV-0146648_26	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0146648_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146648_26	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0146648_27	PHROG	phrog_1865	NA	unknown function
UHGV-0146648_27	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0146648_28	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0146648_28	UniRef90	UniRef90_UPI00156EC2C0	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0146648_28	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0146648_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0146648_28	COG	COG2369	NA	NA
UHGV-0146648_28	Structural annotation	PF15542	NA	NA
UHGV-0146648_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0146648_29	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-0146648_29	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0146648_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0146648_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146648_30	UniRef90	UniRef90_UPI0015708A7C	HNH endonuclease	NA
UHGV-0146648_30	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0146648_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0146648_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146648_30	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0146648_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146648_31	UniRef90	UniRef90_A0A416MN03	Sigma70_r4 domain-containing protein	NA
UHGV-0146648_31	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0146648_31	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0146648_32	UniRef90	UniRef90_UPI001EDD5E1E	Trp family transcriptional regulator	NA
UHGV-0146648_32	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0146648_32	Structural annotation	PF21220, COG2771	NA	NA
UHGV-0146648_35	PHROG	phrog_24386	NA	unknown function
UHGV-0146648_35	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0146648_35	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0146648_37	Structural annotation	PF10400	NA	NA
UHGV-0146648_38	UniRef90	UniRef90_UPI000CF8F0F1	NA	NA
UHGV-0146648_38	eggNOG-mapper	1262914.BN533_01384	NA	NA
UHGV-0146648_38	Pfam	PF07866	NA	DUF1653
UHGV-0146648_38	COG	COG4728	NA	NA
UHGV-0146648_38	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0146648_40	PHROG	phrog_8684	NA	unknown function
UHGV-0146648_40	UniRef90	UniRef90_UPI001C00C8FC	YopX family protein	NA
UHGV-0146648_40	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0146648_40	Pfam	PF09643	YopX protein	YopX
UHGV-0146648_40	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0146648_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0146648_41	PHROG	phrog_7566	NA	unknown function
UHGV-0146648_41	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0146648_42	PHROG	phrog_15077	NA	unknown function
UHGV-0146648_42	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0146648_42	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0146648_43	PHROG	phrog_8470	NA	unknown function
UHGV-0146648_43	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0146648_43	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0146648_43	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0146648_43	Structural annotation	PF14284	NA	NA
UHGV-0146648_44	PHROG	phrog_4433	NA	unknown function
UHGV-0146648_44	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0146648_44	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0146648_45	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0146648_46	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0146648_46	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0146648_46	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-0146648_46	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0146648_46	Pfam	PF00075	RNase H	RNase_H
UHGV-0146648_46	COG	COG0328	Ribonuclease HI	NA
UHGV-0146648_46	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0146648_48	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146648_48	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0146648_48	Structural annotation	PF01446	NA	NA
UHGV-0146648_53	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0146648_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146648_53	UniRef90	UniRef90_A0A6N9JS36	Helix-turn-helix domain-containing protein	NA
UHGV-0146648_53	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146648_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146648_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146648_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0146648_55	PHROG	phrog_7115	NA	unknown function
UHGV-0146648_55	UniRef90	UniRef90_A0A396KU40	PH domain-containing protein	NA
UHGV-0146648_55	eggNOG-mapper	1280698.AUJS01000007_gene1000	Bacterial PH domain	NA
UHGV-0146648_55	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0146648_56	KOfam	K14059	int; integrase	NA
UHGV-0146648_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0146648_56	UniRef90	UniRef90_A0A173RBY2	Site-specific tyrosine recombinase XerD	NA
UHGV-0146648_56	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0146648_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146648_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146648_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0146648_57	UniRef90	UniRef90_K1RC53	Prophage LambdaBa02, site-specific recombinase, phage integrase family (Fragment)	NA
UHGV-0146648_57	eggNOG-mapper	411462.DORLON_00667	viral genome integration into host DNA	NA
UHGV-0146648_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146648_59	UniRef90	UniRef90_A6BEF1	PBECR3 domain-containing protein	NA
UHGV-0146648_59	eggNOG-mapper	411462.DORLON_00668	NA	NA
UHGV-0146648_59	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0146648_59	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0146648_60	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0146648_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146648_60	UniRef90	UniRef90_A0A173ZV92	Helix-turn-helix domain	NA
UHGV-0146648_60	eggNOG-mapper	1158608.I583_02509	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146648_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146648_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146648_61	UniRef90	UniRef90_A0A173ZT63	Clostridial hydrophobic W	NA
UHGV-0146648_61	eggNOG-mapper	411462.DORLON_00669	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0146648_61	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0146648_61	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146648_62	UniRef90	UniRef90_A0A7U9SFE5	Ig-like domain-containing protein	NA
UHGV-0146648_62	eggNOG-mapper	411462.DORLON_00670	Cna protein B-type domain	NA
UHGV-0146648_62	Pfam	PF18202	T-Q ester bond containing domain	TQ
UHGV-0146648_62	NCBIFam	NF033903.0	VaFE repeat-containing surface-anchored protein	NA
UHGV-0146648_62	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA