UHGV-0146670

Genome information

Genome length 30,178 bps

CDS count 53

Completeness 70.27% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146670
vOTU ID	vOTU-039821
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_436935
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.9
Jumbo phage	No

Genome content
Genome length	30,178 bps
GC content	47.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	95.14%
Average CDS length	546.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146670_1	PHROG	phrog_17658	NA	unknown function
UHGV-0146670_1	eggNOG-mapper	1292035.H476_0995	NA	NA
UHGV-0146670_1	Structural annotation	PF18116	NA	NA
UHGV-0146670_2	PHROG	phrog_1914	NA	unknown function
UHGV-0146670_2	UniRef90	UniRef90_UPI001960AE08	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0146670_2	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0146670_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0146670_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0146670_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0146670_3	UniRef90	UniRef90_UPI00156E1494	helix-turn-helix transcriptional regulator	NA
UHGV-0146670_3	eggNOG-mapper	97139.C824_00060	Peptidase S24-like	NA
UHGV-0146670_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0146670_3	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0146670_5	PHROG	phrog_585	NA	unknown function
UHGV-0146670_5	UniRef90	UniRef90_UPI0008F858E7	NA	NA
UHGV-0146670_5	eggNOG-mapper	693746.OBV_25460	NA	NA
UHGV-0146670_5	Pfam	PF10711	NA	DUF2513
UHGV-0146670_5	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0146670_6	UniRef90	UniRef90_A0A3A9C4G4	XRE family transcriptional regulator	NA
UHGV-0146670_6	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0146670_6	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0146670_7	Structural annotation	PF20385	NA	NA
UHGV-0146670_11	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-0146670_14	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146670_14	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0146670_14	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0146670_14	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0146670_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0146670_15	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0146670_15	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0146670_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0146670_16	PHROG	phrog_7566	NA	unknown function
UHGV-0146670_16	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0146670_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146670_17	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0146670_18	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0146670_18	UniRef90	UniRef90_A0A350TWM2	NA	NA
UHGV-0146670_18	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0146670_18	Pfam	PF19808	NA	DUF6291
UHGV-0146670_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0146670_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0146670_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0146670_19	UniRef90	UniRef90_A0A396NX04	IstB_IS21 domain-containing protein	NA
UHGV-0146670_19	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0146670_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0146670_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0146670_19	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0146670_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146670_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146670_20	UniRef90	UniRef90_R5ADK0	Single-stranded DNA-binding protein	NA
UHGV-0146670_20	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0146670_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146670_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146670_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146670_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146670_20	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0146670_21	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146670_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146670_21	UniRef90	UniRef90_A0A401LG78	HTH cro/C1-type domain-containing protein	NA
UHGV-0146670_21	eggNOG-mapper	935948.KE386495_gene1700	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146670_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146670_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0146670_22	PHROG	phrog_7674	NA	unknown function
UHGV-0146670_22	eggNOG-mapper	1235793.C809_02629	NA	NA
UHGV-0146670_22	Structural annotation	PF06003	NA	NA
UHGV-0146670_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0146670_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0146670_23	UniRef90	UniRef90_A0A3R6MA14	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0146670_23	eggNOG-mapper	272563.CD630_09270	C-5 cytosine-specific DNA methylase	NA
UHGV-0146670_23	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0146670_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0146670_23	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0146670_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0146670_23	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0146670_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0146670_26	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0146670_26	eggNOG-mapper	913865.DOT_0576	NA	NA
UHGV-0146670_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0146670_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0146670_26	Structural annotation	PF02540, NF010587, COG0519	NA	NA
UHGV-0146670_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0146670_27	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0146670_27	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0146670_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0146670_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0146670_27	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0146670_28	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0146670_29	PHROG	phrog_874	NA	unknown function
UHGV-0146670_29	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0146670_29	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0146670_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0146670_32	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0146670_32	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0146670_32	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0146670_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0146670_33	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0146670_33	eggNOG-mapper	1123075.AUDP01000020_gene1515	sigma factor activity	NA
UHGV-0146670_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0146670_33	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0146670_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0146670_34	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0146670_34	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0146670_34	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0146670_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0146670_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0146670_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0146670_34	COG	COG0863	DNA modification methylase	NA
UHGV-0146670_34	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0146670_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146670_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0146670_37	UniRef90	UniRef90_R5AG08	Phage terminase	NA
UHGV-0146670_37	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0146670_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0146670_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0146670_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146670_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146670_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0146670_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146670_38	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-0146670_38	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0146670_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0146670_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146670_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146670_39	UniRef90	UniRef90_A0A396NP47	Phage capsid protein	NA
UHGV-0146670_39	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0146670_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146670_39	COG	COG2369	NA	NA
UHGV-0146670_39	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0146670_40	PHROG	phrog_15041	NA	unknown function
UHGV-0146670_40	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0146670_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0146670_43	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0146670_43	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0146670_43	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0146670_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146670_45	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0146670_46	PHROG	phrog_3366	NA	unknown function
UHGV-0146670_46	Pfam	PF20536	NA	DUF6751
UHGV-0146670_46	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0146670_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146670_47	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0146670_47	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-0146670_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0146670_47	Structural annotation	PF11114	NA	NA
UHGV-0146670_48	PHROG	phrog_3266	tail completion	connector
UHGV-0146670_48	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-0146670_48	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0146670_48	Structural annotation	PF12691	NA	NA
UHGV-0146670_49	PHROG	phrog_3099	NA	unknown function
UHGV-0146670_49	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0146670_49	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0146670_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146670_50	Structural annotation	PF20378	NA	NA
UHGV-0146670_51	PHROG	phrog_706	NA	unknown function
UHGV-0146670_51	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-0146670_51	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0146670_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146670_51	Structural annotation	PF06854	NA	NA
UHGV-0146670_52	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0146670_52	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0146670_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0146670_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0146670_53	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0146670_53	eggNOG-mapper	1262449.CP6013_2095	tail component	NA
UHGV-0146670_53	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0146670_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146670_53	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA