UHGV-0146735

Genome information

Genome length 22,070 bps

CDS count 27

Completeness 51.59% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146735
vOTU ID	vOTU-027211
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396032
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.32
Jumbo phage	No

Genome content
Genome length	22,070 bps
GC content	38.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	92.11%
Average CDS length	754.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146735_1	PHROG	phrog_21	portal protein	head and packaging
UHGV-0146735_1	UniRef90	UniRef90_A0A134CAF6	Phage portal protein, lambda family (Fragment)	NA
UHGV-0146735_1	eggNOG-mapper	1064535.MELS_1093	Phage portal protein	NA
UHGV-0146735_1	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0146735_1	COG	COG5511	Phage capsid protein	NA
UHGV-0146735_2	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0146735_2	UniRef90	UniRef90_UPI0019D0AF1B	NA	NA
UHGV-0146735_2	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-0146735_2	Pfam	PF19645	NA	DUF6148
UHGV-0146735_2	Structural annotation	PF19645	NA	NA
UHGV-0146735_3	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0146735_3	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0146735_3	UniRef90	UniRef90_A0A134CAE4	Phage terminase large subunit (Fragment)	NA
UHGV-0146735_3	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0146735_3	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-0146735_3	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0146735_3	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0146735_3	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0146735_3	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0146735_3	Structural annotation	PF20454, PF05876, PF05203, MF_04144, MF_01420, NF005852, NF033889, COG5525, COG1372	NA	NA
UHGV-0146735_4	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0146735_4	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0146735_4	UniRef90	UniRef90_A0A316DDI3	Phage terminase Nu1 subunit (DNA packaging protein)	NA
UHGV-0146735_4	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-0146735_4	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0146735_4	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0146735_5	PHROG	phrog_1558	NA	unknown function
UHGV-0146735_5	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-0146735_5	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0146735_5	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0146735_6	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146735_6	UniRef90	UniRef90_A0A134C0X6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0146735_6	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0146735_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0146735_6	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0146735_7	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0146735_7	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0146735_7	UniRef90	UniRef90_A0A134C0X7	AAA domain-containing protein	NA
UHGV-0146735_7	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0146735_7	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0146735_7	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0146735_7	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0146735_8	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146735_8	UniRef90	UniRef90_A0A811GJH8	NA	NA
UHGV-0146735_8	eggNOG-mapper	1401067.HMPREF0872_03460	NA	NA
UHGV-0146735_8	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0146735_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0146735_8	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0146735_9	PHROG	phrog_29533	NA	unknown function
UHGV-0146735_10	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0146735_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0146735_10	UniRef90	UniRef90_W1V8U0	Lactamase_B domain-containing protein	NA
UHGV-0146735_10	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0146735_10	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0146735_10	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0146735_10	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0146735_11	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0146735_11	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146735_11	UniRef90	UniRef90_A0A811GJA5	Protein RecT	NA
UHGV-0146735_11	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0146735_11	Pfam	PF03837	RecT family	RecT
UHGV-0146735_11	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0146735_11	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0146735_11	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0146735_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0146735_12	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0146735_12	UniRef90	UniRef90_F5KZL5	BRO family, N-terminal domain protein	NA
UHGV-0146735_12	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0146735_12	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0146735_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0146735_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0146735_12	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0146735_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0146735_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146735_13	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-0146735_13	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0146735_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0146735_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0146735_14	PHROG	phrog_16315	NA	unknown function
UHGV-0146735_14	UniRef90	UniRef90_UPI000B139567	PcfJ domain-containing protein	NA
UHGV-0146735_14	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0146735_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0146735_14	Structural annotation	PF14284	NA	NA
UHGV-0146735_15	PHROG	phrog_29844	NA	unknown function
UHGV-0146735_16	PHROG	phrog_35266	NA	unknown function
UHGV-0146735_16	UniRef90	UniRef90_UPI001A614D00	choline-binding protein A	NA
UHGV-0146735_17	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0146735_18	KOfam	K19232	btaE; hyaluronate-binding autotransporter adhesin	NA
UHGV-0146735_18	UniRef90	UniRef90_A0A134CAA5	Hep/Hag repeat protein	NA
UHGV-0146735_18	eggNOG-mapper	546273.VEIDISOL_00699	Hep Hag repeat protein	NA
UHGV-0146735_18	Pfam	PF21300	Grass antifreeze beta roll	LbR_Ice_bind
UHGV-0146735_18	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0146735_18	Pfam	PF05662	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
UHGV-0146735_18	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-0146735_18	COG	COG5295	Autotransporter adhesin	NA
UHGV-0146735_18	Structural annotation	PF03895, NF033478, COG5295	NA	NA
UHGV-0146735_20	UniRef90	UniRef90_A0A2S7ZHK6	DNA-binding protein	NA
UHGV-0146735_20	eggNOG-mapper	546273.VEIDISOL_00695	Helix-turn-helix domain	NA
UHGV-0146735_20	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0146735_20	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0146735_21	UniRef90	UniRef90_C4FP70	HTH cro/C1-type domain-containing protein	NA
UHGV-0146735_21	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0146735_21	Structural annotation	PF13443, MF_00535, TIGR03070, COG1813	NA	NA
UHGV-0146735_22	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0146735_22	UniRef90	UniRef90_C4FP69	DNA-binding helix-turn-helix protein	NA
UHGV-0146735_22	eggNOG-mapper	546273.VEIDISOL_00693	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146735_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146735_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146735_22	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0146735_23	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0146735_23	UniRef90	UniRef90_C4FP68	Putative toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0146735_23	eggNOG-mapper	546273.VEIDISOL_00692	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0146735_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0146735_23	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146735_23	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0146735_24	PHROG	phrog_20936	NA	unknown function
UHGV-0146735_24	UniRef90	UniRef90_W1V9S8	Peptidase_M78 domain-containing protein	NA
UHGV-0146735_24	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0146735_24	Structural annotation	PF06114	NA	NA
UHGV-0146735_25	eggNOG-mapper	883156.HMPREF9282_01295	NA	NA
UHGV-0146735_25	Structural annotation	PF16747	NA	NA
UHGV-0146735_26	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0146735_26	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0146735_26	UniRef90	UniRef90_UPI001960DD2F	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0146735_26	eggNOG-mapper	1273103.NM10_02422	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0146735_26	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0146735_26	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0146735_26	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0146735_27	KOfam	K14059	int; integrase	NA
UHGV-0146735_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0146735_27	UniRef90	UniRef90_D6KLC6	Putative site-specific recombinase, phage integrase family	NA
UHGV-0146735_27	eggNOG-mapper	546273.VEIDISOL_00689	Belongs to the 'phage' integrase family	NA
UHGV-0146735_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146735_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146735_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146735_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA