UHGV-0146813

Genome information

Genome length 37,456 bps

CDS count 49

Completeness 96.51% (high-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146813
vOTU ID	vOTU-073255
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_398857
BioSample	SAMN05065778
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.63
Jumbo phage	No

Genome content
Genome length	37,456 bps
GC content	44.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.95%
Average CDS length	701.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146813_1	PHROG	phrog_1066	NA	unknown function
UHGV-0146813_1	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-0146813_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0146813_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0146813_2	UniRef90	UniRef90_UPI00148AEB9A	terminase large subunit	NA
UHGV-0146813_2	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0146813_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0146813_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0146813_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0146813_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0146813_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0146813_3	UniRef90	UniRef90_UPI00148B140C	phage portal protein	NA
UHGV-0146813_3	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0146813_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0146813_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0146813_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0146813_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0146813_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0146813_4	UniRef90	UniRef90_UPI00148AFF63	Clp protease ClpP	NA
UHGV-0146813_4	eggNOG-mapper	1235793.C809_01919	Clp protease	NA
UHGV-0146813_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0146813_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0146813_4	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0146813_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0146813_5	UniRef90	UniRef90_UPI00148B248C	phage major capsid protein	NA
UHGV-0146813_5	eggNOG-mapper	1235793.C809_01920	Phage capsid family	NA
UHGV-0146813_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0146813_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0146813_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0146813_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146813_6	PHROG	phrog_5223	neck protein	connector
UHGV-0146813_6	UniRef90	UniRef90_A0A7X6Q432	DNA-packaging protein	NA
UHGV-0146813_6	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0146813_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0146813_7	UniRef90	UniRef90_A0A2V2GTA0	Phage head-tail adapter protein	NA
UHGV-0146813_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0146813_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0146813_8	UniRef90	UniRef90_UPI00148AE38B	HK97 gp10 family phage protein	NA
UHGV-0146813_8	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0146813_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0146813_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0146813_8	Structural annotation	TIGR01725	NA	NA
UHGV-0146813_9	eggNOG-mapper	498761.HM1_2876	NA	NA
UHGV-0146813_9	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0146813_10	PHROG	phrog_88	major tail protein	tail
UHGV-0146813_10	UniRef90	UniRef90_UPI00148B0F18	major tail protein	NA
UHGV-0146813_10	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0146813_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0146813_10	COG	COG5492	NA	NA
UHGV-0146813_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0146813_11	eggNOG-mapper	1235792.C808_03058	NA	NA
UHGV-0146813_11	Structural annotation	PF11836	NA	NA
UHGV-0146813_13	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0146813_13	PHROG	phrog_5218	NA	unknown function
UHGV-0146813_13	UniRef90	UniRef90_UPI000CDB7328	phage tail tape measure protein	NA
UHGV-0146813_13	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0146813_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0146813_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0146813_13	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0146813_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0146813_14	UniRef90	UniRef90_UPI00138FB3D0	phage tail protein	NA
UHGV-0146813_14	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0146813_14	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0146813_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0146813_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0146813_15	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0146813_15	PHROG	phrog_13289	tail protein	tail
UHGV-0146813_15	UniRef90	UniRef90_UPI000CDA202F	phage tail protein	NA
UHGV-0146813_15	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0146813_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0146813_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0146813_15	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0146813_16	PHROG	phrog_18444	NA	unknown function
UHGV-0146813_17	eggNOG-mapper	1463856.JOHY01000008_gene806	Parallel beta-helix repeats	NA
UHGV-0146813_17	COG	COG5434	Polygalacturonase	NA
UHGV-0146813_18	PHROG	phrog_17147	NA	unknown function
UHGV-0146813_18	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0146813_18	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0146813_18	Structural annotation	PF10651	NA	NA
UHGV-0146813_19	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0146813_19	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0146813_19	UniRef90	UniRef90_UPI00051C506C	reverse transcriptase domain-containing protein	NA
UHGV-0146813_19	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0146813_19	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0146813_19	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0146813_19	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0146813_19	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0146813_20	eggNOG-mapper	33035.JPJF01000043_gene999	NA	NA
UHGV-0146813_21	PHROG	phrog_1382	NA	unknown function
UHGV-0146813_21	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0146813_21	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0146813_22	PHROG	phrog_199	holin	lysis
UHGV-0146813_22	UniRef90	UniRef90_UPI001D04A6A6	phage holin family protein	NA
UHGV-0146813_22	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0146813_22	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0146813_22	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0146813_22	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0146813_23	KOfam	K00689	E2.4.1.5; dextransucrase [EC:2.4.1.5]	NA
UHGV-0146813_23	PHROG	phrog_38078	NA	unknown function
UHGV-0146813_23	UniRef90	UniRef90_UPI001D07C517	CHAP domain-containing protein	NA
UHGV-0146813_23	eggNOG-mapper	33035.JPJF01000140_gene3001	dextransucrase activity	NA
UHGV-0146813_23	Pfam	PF05257	CHAP domain	CHAP
UHGV-0146813_23	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0146813_23	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0146813_23	Structural annotation	PF13457, TIGR02594, NF033202, COG0791	NA	NA
UHGV-0146813_25	KOfam	K14059	int; integrase	NA
UHGV-0146813_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0146813_25	UniRef90	UniRef90_A0A7G5N2Y9	Site-specific integrase	NA
UHGV-0146813_25	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0146813_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0146813_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146813_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0146813_25	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0146813_26	PHROG	phrog_5319	outer membrane protein	other
UHGV-0146813_26	eggNOG-mapper	742742.HMPREF9452_00922	sh3 domain protein	NA
UHGV-0146813_26	COG	COG3103	NA	NA
UHGV-0146813_27	PHROG	phrog_87	metallo-protease	other
UHGV-0146813_27	UniRef90	UniRef90_UPI000CDB7365	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0146813_27	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0146813_27	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0146813_27	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0146813_27	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0146813_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146813_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146813_28	UniRef90	UniRef90_UPI000CDAC17E	helix-turn-helix domain-containing protein	NA
UHGV-0146813_28	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0146813_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146813_28	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0146813_28	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0146813_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146813_29	UniRef90	UniRef90_UPI000CDB90CB	helix-turn-helix domain-containing protein	NA
UHGV-0146813_29	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0146813_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146813_29	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146813_29	Structural annotation	PF01381, TIGR02607, COG1396	NA	NA
UHGV-0146813_31	PHROG	phrog_1090	NA	unknown function
UHGV-0146813_31	UniRef90	UniRef90_A0A4U9YD42	CRISPR associated protein Cas2	NA
UHGV-0146813_31	eggNOG-mapper	290402.Cbei_4995	NA	NA
UHGV-0146813_31	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA
UHGV-0146813_32	PHROG	phrog_36464	NA	unknown function
UHGV-0146813_32	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0146813_32	Structural annotation	PF09035	NA	NA
UHGV-0146813_34	PHROG	phrog_7713	NA	unknown function
UHGV-0146813_34	UniRef90	UniRef90_UPI001A9A2CBD	pentapeptide repeat-containing protein	NA
UHGV-0146813_34	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0146813_34	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0146813_34	COG	COG1357	NA	NA
UHGV-0146813_34	Structural annotation	PF00805	NA	NA
UHGV-0146813_36	PHROG	phrog_34638	NA	unknown function
UHGV-0146813_36	Structural annotation	COG1965	NA	NA
UHGV-0146813_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146813_38	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0146813_38	Structural annotation	PF21578	NA	NA
UHGV-0146813_39	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0146813_39	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0146813_39	UniRef90	UniRef90_A0A4Q7PJQ5	RNase H superfamily protein	NA
UHGV-0146813_39	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0146813_39	Pfam	PF00075	RNase H	RNase_H
UHGV-0146813_39	COG	COG0328	Ribonuclease HI	NA
UHGV-0146813_39	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0146813_40	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0146813_41	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0146813_42	PHROG	phrog_8470	NA	unknown function
UHGV-0146813_42	UniRef90	UniRef90_UPI0015E171DA	PcfJ domain-containing protein	NA
UHGV-0146813_42	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0146813_42	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0146813_42	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0146813_43	PHROG	phrog_15077	NA	unknown function
UHGV-0146813_43	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0146813_43	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0146813_43	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0146813_44	eggNOG-mapper	1235798.C817_01884	NA	NA
UHGV-0146813_45	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0146813_45	UniRef90	UniRef90_UPI000CDAB14C	winged helix-turn-helix transcriptional regulator	NA
UHGV-0146813_45	eggNOG-mapper	1392502.JNIO01000008_gene1901	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0146813_45	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0146813_45	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0146813_45	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0146813_47	PHROG	phrog_7566	NA	unknown function
UHGV-0146813_47	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0146813_48	PHROG	phrog_5479	NA	unknown function
UHGV-0146813_48	eggNOG-mapper	1211817.CCAT010000003_gene236	NA	NA