UHGV-0146821

Genome information

Genome length 17,269 bps

CDS count 21

Completeness 89.32% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146821
vOTU ID	vOTU-035762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_419332
BioSample	NA
Country	Estonia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.35
Jumbo phage	No

Genome content
Genome length	17,269 bps
GC content	39.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	89.11%
Average CDS length	734.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146821_3	Structural annotation	PF10771	NA	NA
UHGV-0146821_4	Structural annotation	PF14120	NA	NA
UHGV-0146821_6	Structural annotation	PF17548	NA	NA
UHGV-0146821_7	Structural annotation	PF17427	NA	NA
UHGV-0146821_9	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0146821_9	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0146821_9	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0146821_9	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0146821_9	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0146821_9	Structural annotation	PF03175, MF_04055, NF004422, COG0417	NA	NA
UHGV-0146821_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0146821_12	UniRef90	UniRef90_A0A843HIN8	Phage DNA encapsidation protein	NA
UHGV-0146821_12	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0146821_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0146821_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0146821_14	PHROG	phrog_14030	NA	unknown function
UHGV-0146821_14	UniRef90	UniRef90_A0A373N031	NlpC/P60 domain-containing protein	NA
UHGV-0146821_14	eggNOG-mapper	1193128.A200_06878	G5 domain protein	NA
UHGV-0146821_14	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0146821_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0146821_14	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0146821_15	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-0146821_15	eggNOG-mapper	562982.HMPREF0432_00075	heme binding	NA
UHGV-0146821_15	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0146821_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0146821_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0146821_15	Structural annotation	PF18013	NA	NA
UHGV-0146821_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0146821_17	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0146821_17	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0146821_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0146821_18	PHROG	phrog_2248	tail protein	tail
UHGV-0146821_18	UniRef90	UniRef90_A0A843GXV1	Caud_tail_N domain-containing protein	NA
UHGV-0146821_18	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0146821_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0146821_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0146821_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0146821_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-0146821_19	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0146821_19	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0146821_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0146821_19	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0146821_20	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0146821_20	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-0146821_20	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0146821_21	PHROG	phrog_28673	tail protein	tail
UHGV-0146821_21	eggNOG-mapper	501479.ACNW01000089_gene2423	lipolytic protein G-D-S-L family	NA
UHGV-0146821_21	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0146821_21	Structural annotation	PF18559, NF038128	NA	NA