UHGV-0146832

Genome information

Genome length 38,689 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146832
vOTU ID	vOTU-046092
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396057
BioSample	SAMN04480489
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.82
Jumbo phage	No

Genome content
Genome length	38,689 bps
GC content	48.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.86%
Average CDS length	712.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146832_2	PHROG	phrog_992	head protein	head and packaging
UHGV-0146832_2	eggNOG-mapper	595537.Varpa_2747	NA	NA
UHGV-0146832_2	Structural annotation	MF_04122	NA	NA
UHGV-0146832_3	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0146832_3	UniRef90	UniRef90_A0A6F8VD79	NA	NA
UHGV-0146832_3	eggNOG-mapper	557598.LHK_01551	NA	NA
UHGV-0146832_3	Structural annotation	PF07321, COG5034	NA	NA
UHGV-0146832_4	PHROG	phrog_376	tail protein	tail
UHGV-0146832_4	UniRef90	UniRef90_A0A6F8VDG3	NA	NA
UHGV-0146832_4	eggNOG-mapper	557598.LHK_01546	NA	NA
UHGV-0146832_4	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0146832_5	PHROG	phrog_394	tail protein	tail
UHGV-0146832_5	eggNOG-mapper	557598.LHK_01545	NA	NA
UHGV-0146832_5	Structural annotation	PF17212	NA	NA
UHGV-0146832_6	PHROG	phrog_427	NA	unknown function
UHGV-0146832_6	Pfam	PF21190	Bbp16	Bbp16
UHGV-0146832_6	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0146832_7	PHROG	phrog_212	major head protein	head and packaging
UHGV-0146832_7	UniRef90	UniRef90_A0A660PTT1	Phage capsid protein	NA
UHGV-0146832_7	eggNOG-mapper	1344012.ATMI01000052_gene1935	NA	NA
UHGV-0146832_7	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0146832_7	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0146832_8	PHROG	phrog_458	protease	other
UHGV-0146832_8	UniRef90	UniRef90_A0A6J5MJQ1	Putative protease	NA
UHGV-0146832_8	eggNOG-mapper	1003200.AXXA_27995	NA	NA
UHGV-0146832_9	PHROG	phrog_528	NA	unknown function
UHGV-0146832_10	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0146832_10	UniRef90	UniRef90_UPI0012BC467D	portal protein	NA
UHGV-0146832_10	eggNOG-mapper	557598.LHK_01539	Bacteriophage head to tail connecting protein	NA
UHGV-0146832_10	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0146832_10	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0146832_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146832_12	PHROG	phrog_5902	NA	unknown function
UHGV-0146832_12	UniRef90	UniRef90_UPI0012BCF9F6	terminase	NA
UHGV-0146832_12	eggNOG-mapper	665942.HMPREF1022_00139	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0146832_12	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0146832_12	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0146832_13	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0146832_13	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0146832_13	UniRef90	UniRef90_UPI00065A905B	terminase small subunit	NA
UHGV-0146832_13	eggNOG-mapper	1293597.BN147_08365	Terminase small subunit	NA
UHGV-0146832_13	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0146832_13	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0146832_13	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0146832_14	Structural annotation	PF04218	NA	NA
UHGV-0146832_15	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146832_15	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0146832_18	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0146832_18	eggNOG-mapper	1300345.LF41_2396	NA	NA
UHGV-0146832_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0146832_18	COG	COG3756	NA	NA
UHGV-0146832_18	Structural annotation	PF13730, MF_01819, TIGR01610, COG5529	NA	NA
UHGV-0146832_19	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0146832_19	UniRef90	UniRef90_R5EI22	Predicted DNA-binding transcriptional regulator	NA
UHGV-0146832_19	eggNOG-mapper	1380387.JADM01000008_gene962	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0146832_19	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0146832_19	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0146832_19	Structural annotation	PF15943, NF041951, COG4197	NA	NA
UHGV-0146832_20	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0146832_20	UniRef90	UniRef90_R5EG02	Putative phage repressor	NA
UHGV-0146832_20	eggNOG-mapper	397945.Aave_3589	peptidase	NA
UHGV-0146832_20	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0146832_20	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0146832_20	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0146832_21	PHROG	phrog_33858	NA	unknown function
UHGV-0146832_21	eggNOG-mapper	291112.PAU_01444	NA	NA
UHGV-0146832_21	COG	COG4461	Lysozyme inhibitor LprI	NA
UHGV-0146832_21	Structural annotation	COG4461	NA	NA
UHGV-0146832_24	UniRef90	UniRef90_A0A3D3SJ30	Transcriptional regulator	NA
UHGV-0146832_28	PHROG	phrog_1366	NA	unknown function
UHGV-0146832_28	UniRef90	UniRef90_K1JY20	AAA domain-containing protein	NA
UHGV-0146832_28	eggNOG-mapper	742823.HMPREF9465_00902	AAA domain	NA
UHGV-0146832_28	Pfam	PF13479	AAA domain	AAA_24
UHGV-0146832_28	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0146832_28	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0146832_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0146832_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0146832_29	UniRef90	UniRef90_F3QNN6	Single-stranded DNA-binding protein	NA
UHGV-0146832_29	eggNOG-mapper	469610.HMPREF0189_01394	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0146832_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0146832_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0146832_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0146832_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0146832_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0146832_30	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0146832_30	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0146832_30	eggNOG-mapper	742823.HMPREF9465_00905	Siphovirus Gp157	NA
UHGV-0146832_30	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0146832_30	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0146832_33	eggNOG-mapper	762966.HMPREF9439_00996	NA	NA
UHGV-0146832_34	UniRef90	UniRef90_F3QJ92	Conserved domain protein	NA
UHGV-0146832_34	eggNOG-mapper	469610.HMPREF0189_01154	NA	NA
UHGV-0146832_35	eggNOG-mapper	469610.HMPREF0189_01079	NA	NA
UHGV-0146832_36	PHROG	phrog_2384	NA	unknown function
UHGV-0146832_36	UniRef90	UniRef90_D9Y6L2	P63C domain-containing protein	NA
UHGV-0146832_36	eggNOG-mapper	469610.HMPREF0189_01078	P63C domain	NA
UHGV-0146832_36	Pfam	PF10546	P63C domain	P63C
UHGV-0146832_36	Structural annotation	PF10546	NA	NA
UHGV-0146832_38	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0146832_39	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0146832_39	UniRef90	UniRef90_D9Y6B9	Transcriptional regulator, AlpA family	NA
UHGV-0146832_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0146832_39	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0146832_41	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0146832_41	PHROG	phrog_7	endolysin	lysis
UHGV-0146832_41	UniRef90	UniRef90_A0A5B3FP35	Lysozyme	NA
UHGV-0146832_41	eggNOG-mapper	469610.HMPREF0189_02350	Phage lysozyme	NA
UHGV-0146832_41	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0146832_41	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0146832_41	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0146832_42	PHROG	phrog_199	holin	lysis
UHGV-0146832_42	UniRef90	UniRef90_UPI0012BCAC2D	phage holin family protein	NA
UHGV-0146832_42	eggNOG-mapper	762966.HMPREF9439_01063	Bacteriophage holin family	NA
UHGV-0146832_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0146832_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0146832_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0146832_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0146832_43	Structural annotation	PF05899, MF_01537, NF007875, COG3123	NA	NA
UHGV-0146832_44	Structural annotation	PF16990, MF_04072	NA	NA
UHGV-0146832_45	Structural annotation	PF16990, TIGR04362	NA	NA
UHGV-0146832_46	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0146832_46	UniRef90	UniRef90_UPI001F4F63DF	phage tail assembly chaperone	NA
UHGV-0146832_46	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-0146832_46	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0146832_46	Structural annotation	PF16778	NA	NA
UHGV-0146832_47	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0146832_47	eggNOG-mapper	563192.HMPREF0179_03429	domain, Protein	NA
UHGV-0146832_47	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0146832_47	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0146832_48	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0146832_48	PHROG	phrog_366	tail fiber protein	tail
UHGV-0146832_48	eggNOG-mapper	1072685.IX83_07040	NA	NA
UHGV-0146832_48	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0146832_48	Structural annotation	PF03906	NA	NA
UHGV-0146832_49	PHROG	phrog_684	virion structural protein	head and packaging
UHGV-0146832_49	eggNOG-mapper	1157708.KB907450_gene5438	NA	NA
UHGV-0146832_50	PHROG	phrog_5143	NA	unknown function
UHGV-0146832_50	eggNOG-mapper	1415780.JPOG01000001_gene1744	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-0146832_50	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0146832_50	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA