UHGV-0146883

Genome information

vOTU vOTU-019420

Genome length 27,810 bps

CDS count 49

Completeness 63.76% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146883
vOTU ID	vOTU-019420
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_425574
BioSample	SAMN05826984
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.01
Jumbo phage	No

Genome content
Genome length	27,810 bps
GC content	42.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.56%
Average CDS length	534.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146883_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0146883_6	PHROG	phrog_25231	NA	unknown function
UHGV-0146883_6	eggNOG-mapper	742733.HMPREF9469_06061	NA	NA
UHGV-0146883_6	Structural annotation	PF04936	NA	NA
UHGV-0146883_7	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0146883_7	AcrCatalog	cluster_11670	NA	NA
UHGV-0146883_8	UniRef90	UniRef90_A0A0U5Q8E1	Antitoxin HipB	NA
UHGV-0146883_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0146883_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0146883_9	UniRef90	UniRef90_A0A0U5I2B2	HTH-type transcriptional regulator ImmR	NA
UHGV-0146883_9	eggNOG-mapper	642492.Clole_1473	sequence-specific DNA binding	NA
UHGV-0146883_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0146883_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146883_9	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-0146883_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146883_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0146883_10	PHROG	phrog_33130	NA	unknown function
UHGV-0146883_10	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0146883_10	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0146883_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0146883_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0146883_11	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0146883_11	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0146883_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0146883_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0146883_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0146883_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0146883_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0146883_12	UniRef90	UniRef90_R0BLA8	PBSX family phage terminase, large subunit	NA
UHGV-0146883_12	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0146883_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0146883_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0146883_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0146883_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0146883_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0146883_14	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0146883_14	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0146883_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146883_15	PHROG	phrog_19695	NA	unknown function
UHGV-0146883_15	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0146883_15	Structural annotation	PF19714	NA	NA
UHGV-0146883_16	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0146883_16	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0146883_16	Structural annotation	PF10651	NA	NA
UHGV-0146883_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0146883_17	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0146883_17	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0146883_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0146883_17	COG	COG2369	NA	NA
UHGV-0146883_17	Structural annotation	PF06152	NA	NA
UHGV-0146883_18	PHROG	phrog_3754	NA	unknown function
UHGV-0146883_18	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0146883_19	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0146883_19	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0146883_20	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0146883_20	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0146883_20	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0146883_21	PHROG	phrog_21718	NA	unknown function
UHGV-0146883_21	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0146883_22	PHROG	phrog_22984	NA	unknown function
UHGV-0146883_23	PHROG	phrog_16490	NA	unknown function
UHGV-0146883_23	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0146883_25	PHROG	phrog_20016	NA	unknown function
UHGV-0146883_25	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0146883_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0146883_26	PHROG	phrog_28802	NA	unknown function
UHGV-0146883_26	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0146883_27	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146883_27	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-0146883_27	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-0146883_28	UniRef90	UniRef90_N9YMZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0146883_28	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0146883_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0146883_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0146883_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0146883_30	UniRef90	UniRef90_UPI001D15D4B7	cysteine-rich KTR domain-containing protein	NA
UHGV-0146883_30	eggNOG-mapper	476272.RUMHYD_01773	Cysteine-rich KTR	NA
UHGV-0146883_30	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0146883_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0146883_31	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0146883_31	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0146883_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0146883_31	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0146883_32	PHROG	phrog_247	major head protein	head and packaging
UHGV-0146883_32	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0146883_32	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0146883_32	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0146883_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0146883_34	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0146883_35	PHROG	phrog_1233	NA	unknown function
UHGV-0146883_35	eggNOG-mapper	476272.RUMHYD_01960	NA	NA
UHGV-0146883_36	PHROG	phrog_1129	holin	lysis
UHGV-0146883_36	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0146883_36	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0146883_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0146883_36	Structural annotation	PF06946	NA	NA
UHGV-0146883_37	PHROG	phrog_8680	NA	unknown function
UHGV-0146883_37	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0146883_37	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0146883_37	Pfam	PF14386	NA	DUF4417
UHGV-0146883_37	Structural annotation	PF14386	NA	NA
UHGV-0146883_39	PHROG	phrog_3366	NA	unknown function
UHGV-0146883_39	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0146883_39	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0146883_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0146883_40	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0146883_40	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0146883_40	Structural annotation	PF11114	NA	NA
UHGV-0146883_41	PHROG	phrog_3266	tail completion	connector
UHGV-0146883_41	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0146883_41	Structural annotation	PF12691	NA	NA
UHGV-0146883_42	PHROG	phrog_3099	NA	unknown function
UHGV-0146883_42	eggNOG-mapper	1120746.CCNL01000014_gene2102	NA	NA
UHGV-0146883_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0146883_43	PHROG	phrog_11299	NA	unknown function
UHGV-0146883_43	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0146883_43	Structural annotation	PF10666	NA	NA
UHGV-0146883_44	PHROG	phrog_706	NA	unknown function
UHGV-0146883_44	UniRef90	UniRef90_A0A1I0K8S4	Bacteriophage Gp15 protein	NA
UHGV-0146883_44	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0146883_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0146883_44	Structural annotation	PF06854	NA	NA
UHGV-0146883_45	PHROG	phrog_37543	NA	unknown function
UHGV-0146883_45	UniRef90	UniRef90_UPI001DBC5439	PspA/IM30 family protein	NA
UHGV-0146883_45	eggNOG-mapper	1298920.KI911353_gene2068	domain protein	NA
UHGV-0146883_45	COG	COG1511	NA	NA
UHGV-0146883_46	PHROG	phrog_1194	NA	unknown function
UHGV-0146883_46	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0146883_46	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0146883_47	PHROG	phrog_32744	NA	unknown function
UHGV-0146883_47	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0146883_47	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0146883_48	PHROG	phrog_18725	NA	unknown function
UHGV-0146883_48	eggNOG-mapper	411902.CLOBOL_00123	NA	NA