UHGV-0146893

Genome information

Genome length 59,031 bps

CDS count 66

Completeness 93.02% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0146893
vOTU ID	vOTU-060076
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_425374
BioSample	SAMN05827020
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.26
Jumbo phage	No

Genome content
Genome length	59,031 bps
GC content	43.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.01%
Average CDS length	815.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0146893_1	PHROG	phrog_15773	NA	unknown function
UHGV-0146893_2	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0146893_2	UniRef90	UniRef90_A0A173VJD5	ERF superfamily	NA
UHGV-0146893_2	eggNOG-mapper	1408428.JNJP01000005_gene5	ERF superfamily	NA
UHGV-0146893_2	Pfam	PF04404	ERF superfamily	ERF
UHGV-0146893_2	Structural annotation	PF04404	NA	NA
UHGV-0146893_4	UniRef90	UniRef90_F3QQV6	Conserved domain protein	NA
UHGV-0146893_4	eggNOG-mapper	762982.HMPREF9442_00549	NA	NA
UHGV-0146893_5	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0146893_5	UniRef90	UniRef90_UPI00164A9C4B	NA	NA
UHGV-0146893_5	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0146893_5	Pfam	PF07105	NA	DUF1367
UHGV-0146893_5	Structural annotation	PF07105	NA	NA
UHGV-0146893_6	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0146893_6	UniRef90	UniRef90_A0A173VHK3	NUMOD4 motif	NA
UHGV-0146893_6	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0146893_6	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0146893_6	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0146893_6	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0146893_6	Structural annotation	PF07463	NA	NA
UHGV-0146893_7	PHROG	phrog_19572	NA	unknown function
UHGV-0146893_7	UniRef90	UniRef90_A0A174LVG4	NA	NA
UHGV-0146893_7	eggNOG-mapper	1122931.AUAE01000017_gene4240	Phage tail protein	NA
UHGV-0146893_7	Pfam	PF14902	NA	DUF4494
UHGV-0146893_7	Structural annotation	PF14902	NA	NA
UHGV-0146893_9	PHROG	phrog_200	lipoprotein	other
UHGV-0146893_9	UniRef90	UniRef90_UPI000E5006F6	SPFH domain-containing protein	NA
UHGV-0146893_9	eggNOG-mapper	742727.HMPREF9447_04889	SPFH Band 7 PHB domain protein	NA
UHGV-0146893_9	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0146893_9	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0146893_10	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0146893_10	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-0146893_13	Structural annotation	PF19727, NF041247	NA	NA
UHGV-0146893_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0146893_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0146893_17	UniRef90	UniRef90_UPI000C1580E2	AAA family ATPase	NA
UHGV-0146893_17	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0146893_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0146893_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0146893_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0146893_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0146893_19	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0146893_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0146893_19	UniRef90	UniRef90_A0A3R5X8M2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0146893_19	eggNOG-mapper	1122947.FR7_2498	Cytosine-specific methyltransferase	NA
UHGV-0146893_19	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0146893_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0146893_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0146893_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0146893_19	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0146893_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0146893_21	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0146893_21	UniRef90	UniRef90_UPI0012B16C4E	antA/AntB antirepressor family protein	NA
UHGV-0146893_21	eggNOG-mapper	411901.BACCAC_01209	BRO family, N-terminal domain	NA
UHGV-0146893_21	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0146893_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0146893_21	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0146893_23	PHROG	phrog_20542	NA	unknown function
UHGV-0146893_23	eggNOG-mapper	216591.BCAM1034	NA	NA
UHGV-0146893_25	PHROG	phrog_8684	NA	unknown function
UHGV-0146893_25	UniRef90	UniRef90_A0A173VH02	YopX protein	NA
UHGV-0146893_25	eggNOG-mapper	742727.HMPREF9447_04806	YopX protein	NA
UHGV-0146893_25	Pfam	PF09643	YopX protein	YopX
UHGV-0146893_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0146893_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0146893_26	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0146893_26	PHROG	phrog_3193	NA	unknown function
UHGV-0146893_26	UniRef90	UniRef90_A0A173VGZ5	ASCH domain	NA
UHGV-0146893_26	eggNOG-mapper	1347393.HG726021_gene398	ASCH domain	NA
UHGV-0146893_26	Pfam	PF04266	ASCH domain	ASCH
UHGV-0146893_26	Structural annotation	COG4933	NA	NA
UHGV-0146893_27	UniRef90	UniRef90_UPI0018989DBE	NA	NA
UHGV-0146893_27	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0146893_27	Pfam	PF04448	NA	DUF551
UHGV-0146893_27	Structural annotation	NF037951	NA	NA
UHGV-0146893_29	UniRef90	UniRef90_A0A496CRB8	Fructan hydrolase	NA
UHGV-0146893_29	eggNOG-mapper	484018.BACPLE_02623	NA	NA
UHGV-0146893_31	PHROG	phrog_32516	NA	unknown function
UHGV-0146893_31	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0146893_31	Structural annotation	PF11134, COG3292	NA	NA
UHGV-0146893_36	PHROG	phrog_156	portal protein	head and packaging
UHGV-0146893_36	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0146893_36	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0146893_37	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-0146893_37	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0146893_38	PHROG	phrog_38431	NA	unknown function
UHGV-0146893_38	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0146893_38	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0146893_40	PHROG	phrog_28898	NA	unknown function
UHGV-0146893_40	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0146893_40	Structural annotation	PF10781	NA	NA
UHGV-0146893_41	PHROG	phrog_31654	NA	unknown function
UHGV-0146893_41	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0146893_42	PHROG	phrog_16490	NA	unknown function
UHGV-0146893_42	UniRef90	UniRef90_A0A8F1B6F8	Outer capsid protein/viral fiber	NA
UHGV-0146893_42	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0146893_44	PHROG	phrog_5990	NA	unknown function
UHGV-0146893_44	eggNOG-mapper	1189612.A33Q_1573	NA	NA
UHGV-0146893_44	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-0146893_45	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0146893_46	PHROG	phrog_26448	NA	unknown function
UHGV-0146893_46	eggNOG-mapper	1235803.C825_05324	NA	NA
UHGV-0146893_46	Pfam	PF20647	NA	DUF6808
UHGV-0146893_46	Structural annotation	PF20647	NA	NA
UHGV-0146893_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0146893_47	PHROG	phrog_822	amidase	lysis
UHGV-0146893_47	UniRef90	UniRef90_A0A173VI77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146893_47	eggNOG-mapper	1235803.C825_00174	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0146893_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0146893_47	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0146893_47	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0146893_48	PHROG	phrog_15037	NA	unknown function
UHGV-0146893_48	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0146893_48	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0146893_48	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0146893_49	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0146893_49	UniRef90	UniRef90_A0A173VGJ1	SGNH_hydro domain-containing protein	NA
UHGV-0146893_49	eggNOG-mapper	1121333.JMLH01000086_gene1313	calcium- and calmodulin-responsive adenylate cyclase activity	NA
UHGV-0146893_49	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0146893_49	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0146893_49	Structural annotation	PF13472, MF_00526, TIGR01501, COG2845	NA	NA
UHGV-0146893_51	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0146893_51	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0146893_52	PHROG	phrog_22135	NA	unknown function
UHGV-0146893_52	Structural annotation	PF17212	NA	NA
UHGV-0146893_54	PHROG	phrog_26635	NA	unknown function
UHGV-0146893_54	UniRef90	UniRef90_R7DGV7	BIG2 domain-containing protein	NA
UHGV-0146893_54	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0146893_54	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0146893_55	PHROG	phrog_22323	NA	unknown function
UHGV-0146893_55	eggNOG-mapper	563031.HMPREF0666_01148	NA	NA
UHGV-0146893_57	UniRef90	UniRef90_A0A173VHX4	Rhomboid domain-containing protein	NA
UHGV-0146893_57	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0146893_57	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-0146893_58	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0146893_58	UniRef90	UniRef90_UPI0013E9F59E	terminase	NA
UHGV-0146893_58	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0146893_58	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0146893_58	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0146893_60	Structural annotation	PF18933, MF_02248, NF040946, COG5435	NA	NA
UHGV-0146893_62	PHROG	phrog_14770	NA	unknown function
UHGV-0146893_62	eggNOG-mapper	1347393.HG726020_gene1834	CRISPR-associated helicase, Cas3	NA
UHGV-0146893_62	Pfam	PF18823	Inorganic Pyrophosphatase	InPase
UHGV-0146893_62	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0146893_62	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0146893_62	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0146893_64	eggNOG-mapper	1227276.HMPREF9148_00167	NA	NA
UHGV-0146893_66	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0146893_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0146893_66	UniRef90	UniRef90_A0A173VFS5	Tyrosine recombinase XerD	NA
UHGV-0146893_66	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0146893_66	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0146893_66	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0146893_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0146893_66	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0146893_66	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA