UHGV-0147019

Genome information

Genome length 36,104 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147019
vOTU ID	vOTU-009086
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442625
BioSample	SAMN05971626
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.81
Jumbo phage	No

Genome content
Genome length	36,104 bps
GC content	42.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.45%
Average CDS length	519.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147019_2	PHROG	phrog_443	holin	lysis
UHGV-0147019_2	UniRef90	UniRef90_UPI001570A68C	holin	NA
UHGV-0147019_2	eggNOG-mapper	411462.DORLON_00825	Putative lactococcus lactis phage r1t holin	NA
UHGV-0147019_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0147019_2	Structural annotation	PF16945	NA	NA
UHGV-0147019_3	PHROG	phrog_4105	NA	unknown function
UHGV-0147019_3	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0147019_4	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0147019_6	eggNOG-mapper	1280698.AUJS01000007_gene1053	NA	NA
UHGV-0147019_7	PHROG	phrog_12931	NA	unknown function
UHGV-0147019_7	eggNOG-mapper	742765.HMPREF9457_03370	NA	NA
UHGV-0147019_8	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0147019_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0147019_8	UniRef90	UniRef90_A0A1C5SV17	Tyrosine recombinase XerD	NA
UHGV-0147019_8	eggNOG-mapper	411461.DORFOR_00731	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0147019_8	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0147019_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147019_8	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0147019_8	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0147019_9	PHROG	phrog_9994	NA	unknown function
UHGV-0147019_9	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0147019_9	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0147019_9	Structural annotation	PF20747, NF012201	NA	NA
UHGV-0147019_10	PHROG	phrog_538	minor tail protein	tail
UHGV-0147019_10	UniRef90	UniRef90_UPI001D071BA3	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0147019_10	eggNOG-mapper	658655.HMPREF0988_02550	NA	NA
UHGV-0147019_10	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0147019_10	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0147019_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147019_11	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0147019_11	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0147019_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0147019_12	UniRef90	UniRef90_A0A374BV79	PhageMin_Tail domain-containing protein	NA
UHGV-0147019_12	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0147019_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0147019_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0147019_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0147019_13	PHROG	phrog_706	NA	unknown function
UHGV-0147019_13	UniRef90	UniRef90_UPI0008360889	Gp15 family bacteriophage protein	NA
UHGV-0147019_13	eggNOG-mapper	1229517.AMFD01000018_gene176	Bacteriophage Gp15 protein	NA
UHGV-0147019_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0147019_13	Structural annotation	PF06854	NA	NA
UHGV-0147019_14	Structural annotation	PF10666	NA	NA
UHGV-0147019_15	PHROG	phrog_820	major tail protein	tail
UHGV-0147019_15	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0147019_15	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0147019_15	COG	COG5492	NA	NA
UHGV-0147019_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0147019_16	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0147019_16	Structural annotation	PF12691	NA	NA
UHGV-0147019_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0147019_17	UniRef90	UniRef90_UPI00082D57A1	minor capsid protein	NA
UHGV-0147019_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0147019_17	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0147019_18	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0147019_18	UniRef90	UniRef90_UPI0003FC0B4B	putative minor capsid protein	NA
UHGV-0147019_18	eggNOG-mapper	1231057.AMGD01000018_gene3616	Minor capsid protein	NA
UHGV-0147019_18	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0147019_18	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0147019_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0147019_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0147019_19	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0147019_19	eggNOG-mapper	665959.HMPREF1013_00198	NA	NA
UHGV-0147019_20	PHROG	phrog_267	major head protein	head and packaging
UHGV-0147019_20	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0147019_20	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0147019_20	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0147019_20	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0147019_21	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0147019_22	KOfam	K07584	NA	NA
UHGV-0147019_22	PHROG	phrog_4478	peptidase	other
UHGV-0147019_22	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0147019_22	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0147019_22	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0147019_22	COG	COG2868	NA	NA
UHGV-0147019_22	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0147019_23	PHROG	phrog_34144	NA	unknown function
UHGV-0147019_23	eggNOG-mapper	936596.HMPREF1495_0343	NA	NA
UHGV-0147019_23	Structural annotation	PF20111	NA	NA
UHGV-0147019_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0147019_24	UniRef90	UniRef90_UPI000C7906A1	phage minor capsid protein	NA
UHGV-0147019_24	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0147019_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0147019_24	COG	COG2369	NA	NA
UHGV-0147019_24	Structural annotation	PF06152	NA	NA
UHGV-0147019_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0147019_25	UniRef90	UniRef90_A0A374BVV6	Phage portal protein	NA
UHGV-0147019_25	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0147019_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0147019_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0147019_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0147019_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0147019_26	UniRef90	UniRef90_A0A395YD55	PBSX family phage terminase large subunit	NA
UHGV-0147019_26	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0147019_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0147019_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0147019_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0147019_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0147019_27	PHROG	phrog_2412	NA	unknown function
UHGV-0147019_27	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0147019_27	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0147019_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0147019_28	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0147019_28	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0147019_28	Structural annotation	PF02996	NA	NA
UHGV-0147019_32	PHROG	phrog_15198	NA	unknown function
UHGV-0147019_32	UniRef90	UniRef90_UPI001106CE2F	NA	NA
UHGV-0147019_32	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0147019_32	Pfam	PF04448	NA	DUF551
UHGV-0147019_33	PHROG	phrog_25456	NA	unknown function
UHGV-0147019_34	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0147019_37	PHROG	phrog_17690	NA	unknown function
UHGV-0147019_37	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0147019_39	PHROG	phrog_2600	NA	unknown function
UHGV-0147019_39	eggNOG-mapper	1298920.KI911353_gene2720	NA	NA
UHGV-0147019_40	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0147019_40	UniRef90	UniRef90_UPI001898E47B	SAM-dependent methyltransferase	NA
UHGV-0147019_40	eggNOG-mapper	796940.HMPREF9628_00165	methyltransferase	NA
UHGV-0147019_40	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0147019_40	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0147019_40	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0147019_40	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0147019_41	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0147019_41	UniRef90	UniRef90_UPI00156DBFFE	radical SAM protein	NA
UHGV-0147019_41	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0147019_41	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0147019_41	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0147019_42	PHROG	phrog_3253	NA	unknown function
UHGV-0147019_42	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0147019_43	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147019_43	UniRef90	UniRef90_UPI00156F191E	NUMOD4 domain-containing protein	NA
UHGV-0147019_43	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0147019_43	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0147019_43	Structural annotation	PF13392	NA	NA
UHGV-0147019_44	PHROG	phrog_15768	NA	unknown function
UHGV-0147019_44	UniRef90	UniRef90_A0A415H5D2	NA	NA
UHGV-0147019_44	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0147019_44	AcrCatalog	cluster_38323	NA	NA
UHGV-0147019_44	Pfam	PF19808	NA	DUF6291
UHGV-0147019_44	Structural annotation	PF19808	NA	NA
UHGV-0147019_45	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0147019_45	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0147019_45	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0147019_47	PHROG	phrog_7566	NA	unknown function
UHGV-0147019_47	UniRef90	UniRef90_A0A412EXQ2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0147019_47	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0147019_48	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0147019_48	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0147019_49	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0147019_49	UniRef90	UniRef90_A0A415H568	NA	NA
UHGV-0147019_49	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0147019_49	Pfam	PF06378	NA	DUF1071
UHGV-0147019_49	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0147019_52	UniRef90	UniRef90_UPI001F2FF670	CbrC family protein	NA
UHGV-0147019_54	PHROG	phrog_32342	NA	unknown function
UHGV-0147019_56	Structural annotation	PF10743, NF040990	NA	NA
UHGV-0147019_57	PHROG	phrog_3240	NA	unknown function
UHGV-0147019_57	UniRef90	UniRef90_A0A380JYJ3	ORF065	NA
UHGV-0147019_57	eggNOG-mapper	1461246.X2KU02_9VIRU	NA	NA
UHGV-0147019_58	eggNOG-mapper	1095750.HMPREF9970_1010	NA	NA
UHGV-0147019_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0147019_60	UniRef90	UniRef90_UPI001106D2A7	helix-turn-helix domain-containing protein	NA
UHGV-0147019_60	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0147019_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147019_60	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0147019_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0147019_61	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0147019_61	UniRef90	UniRef90_A0A7U6QI74	Phage transcriptional regulator, Cro/CI family	NA
UHGV-0147019_61	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0147019_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147019_61	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0147019_61	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0147019_62	PHROG	phrog_87	metallo-protease	other
UHGV-0147019_62	UniRef90	UniRef90_A0A1M7NI02	Peptidase_M78 domain-containing protein	NA
UHGV-0147019_62	eggNOG-mapper	936573.HMPREF1147_1691	NA	NA
UHGV-0147019_62	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0147019_62	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0147019_62	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0147019_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0147019_64	UniRef90	UniRef90_R6SPW0	Tyr recombinase domain-containing protein	NA
UHGV-0147019_64	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-0147019_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147019_64	Structural annotation	PF00589, MF_01807, NF007246, COG4974	NA	NA