UHGV-0147021

Genome information

Genome length 40,333 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9503

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147021
vOTU ID	vOTU-005999
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_442620
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9503
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.61
Jumbo phage	No

Genome content
Genome length	40,333 bps
GC content	27.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	86.26%
Average CDS length	581.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147021_2	eggNOG-mapper	1414720.CBYM010000071_gene3375	Helix-turn-helix domain of resolvase	NA
UHGV-0147021_2	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0147021_4	PHROG	phrog_2329	NA	unknown function
UHGV-0147021_4	UniRef90	UniRef90_UPI0018AB79C1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0147021_4	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0147021_5	UniRef90	UniRef90_A0A5P3XKH8	DNA-binding protein	NA
UHGV-0147021_5	eggNOG-mapper	1292035.H476_3612	NA	NA
UHGV-0147021_5	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0147021_7	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0147021_7	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0147021_7	UniRef90	UniRef90_A0A1C5VEM7	ALP_N domain-containing protein	NA
UHGV-0147021_7	eggNOG-mapper	1414720.CBYM010000001_gene721	StbA protein	NA
UHGV-0147021_7	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0147021_7	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0147021_7	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0147021_7	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0147021_8	PHROG	phrog_4223	NA	unknown function
UHGV-0147021_8	AcrCatalog	cluster_2615	NA	NA
UHGV-0147021_11	PHROG	phrog_6493	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0147021_11	UniRef90	UniRef90_UPI001C111768	DnaD domain protein	NA
UHGV-0147021_11	eggNOG-mapper	500633.CLOHIR_02024	DnaD domain protein	NA
UHGV-0147021_11	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0147021_11	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0147021_13	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0147021_13	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0147021_13	UniRef90	UniRef90_UPI0005E8B277	helix-turn-helix transcriptional regulator	NA
UHGV-0147021_13	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0147021_13	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0147021_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0147021_13	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0147021_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0147021_15	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0147021_15	eggNOG-mapper	999413.HMPREF1094_02028	NA	NA
UHGV-0147021_15	Structural annotation	PF21578	NA	NA
UHGV-0147021_18	PHROG	phrog_1974	NA	unknown function
UHGV-0147021_18	UniRef90	UniRef90_UPI001C114AB8	nucleoid-associated protein	NA
UHGV-0147021_18	eggNOG-mapper	1292035.H476_1947	NA	NA
UHGV-0147021_18	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0147021_18	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0147021_18	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0147021_20	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0147021_21	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0147021_21	UniRef90	UniRef90_UPI001C0F3BD0	Bro-N domain-containing protein	NA
UHGV-0147021_21	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0147021_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0147021_21	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0147021_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0147021_21	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0147021_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0147021_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0147021_23	UniRef90	UniRef90_UPI00189AF047	single-stranded DNA-binding protein	NA
UHGV-0147021_23	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0147021_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0147021_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0147021_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0147021_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0147021_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0147021_27	PHROG	phrog_774	NA	unknown function
UHGV-0147021_27	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0147021_31	PHROG	phrog_824	NA	unknown function
UHGV-0147021_31	UniRef90	UniRef90_UPI000B821158	VRR-NUC domain-containing protein	NA
UHGV-0147021_31	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0147021_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0147021_31	Structural annotation	PF08774	NA	NA
UHGV-0147021_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0147021_32	UniRef90	UniRef90_A0A1C5YDW7	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0147021_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147021_33	UniRef90	UniRef90_A0A1C5VGQ3	HNH endonuclease	NA
UHGV-0147021_33	eggNOG-mapper	1219626.HMPREF1639_07400	Endonuclease	NA
UHGV-0147021_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0147021_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0147021_33	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0147021_34	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0147021_34	UniRef90	UniRef90_A0A1C5VH27	Phage terminase, small subunit	NA
UHGV-0147021_34	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0147021_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0147021_34	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0147021_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0147021_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0147021_35	UniRef90	UniRef90_A0A1C5VGI7	Phage terminase-like protein, large subunit	NA
UHGV-0147021_35	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0147021_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0147021_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0147021_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147021_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0147021_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0147021_36	UniRef90	UniRef90_A0A1C5VH40	Phage portal protein, HK97 family	NA
UHGV-0147021_36	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0147021_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0147021_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0147021_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0147021_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0147021_37	PHROG	phrog_16951	NA	unknown function
UHGV-0147021_37	eggNOG-mapper	1410617.JHXH01000012_gene652	NA	NA
UHGV-0147021_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0147021_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0147021_38	UniRef90	UniRef90_UPI00189A180B	phage major capsid protein	NA
UHGV-0147021_38	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-0147021_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147021_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147021_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147021_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147021_39	UniRef90	UniRef90_UPI001B836AC1	head-tail connector protein	NA
UHGV-0147021_39	eggNOG-mapper	1567013.A0A0A7S0C9_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0147021_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0147021_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0147021_39	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0147021_40	UniRef90	UniRef90_A0A1C5VGA9	Bacteriophage head-tail adaptor	NA
UHGV-0147021_40	eggNOG-mapper	411470.RUMGNA_02322	Phage head-tail joining protein	NA
UHGV-0147021_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0147021_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0147021_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0147021_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0147021_41	UniRef90	UniRef90_UPI00156FE9DA	HK97 gp10 family phage protein	NA
UHGV-0147021_41	eggNOG-mapper	1158604.I591_01763	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0147021_41	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0147021_43	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0147021_43	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0147021_43	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0147021_44	Structural annotation	PF17388	NA	NA
UHGV-0147021_45	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0147021_46	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0147021_46	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0147021_46	UniRef90	UniRef90_A0A1C5VEY4	Phage-related minor tail protein	NA
UHGV-0147021_46	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0147021_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0147021_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0147021_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0147021_47	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147021_47	UniRef90	UniRef90_UPI0013776F4D	NA	NA
UHGV-0147021_47	eggNOG-mapper	1560313.A0A0D3MT84_9CAUD	regulation of transcription, DNA-dependent	NA
UHGV-0147021_47	Structural annotation	PF18741, PF14311, MF_04160, NF007294, COG3727	NA	NA
UHGV-0147021_48	PHROG	phrog_38258	NA	unknown function
UHGV-0147021_48	UniRef90	UniRef90_UPI0004D920DE	phage tail tape measure protein	NA
UHGV-0147021_48	eggNOG-mapper	1414720.CBYM010000040_gene1655	tail tape measure protein	NA
UHGV-0147021_48	COG	COG5283	Phage-related tail protein	NA
UHGV-0147021_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147021_49	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0147021_49	eggNOG-mapper	1292035.H476_1005	tail component	NA
UHGV-0147021_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0147021_49	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0147021_50	PHROG	phrog_7043	tail protein	tail
UHGV-0147021_50	UniRef90	UniRef90_UPI00189703DD	phage tail protein	NA
UHGV-0147021_50	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0147021_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0147021_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0147021_50	COG	COG4926	Phage-related protein	NA
UHGV-0147021_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0147021_51	PHROG	phrog_16573	NA	unknown function
UHGV-0147021_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0147021_51	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0147021_52	PHROG	phrog_13589	NA	unknown function
UHGV-0147021_52	eggNOG-mapper	913865.DOT_2883	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0147021_52	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0147021_54	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0147021_54	PHROG	phrog_435	endolysin	lysis
UHGV-0147021_54	UniRef90	UniRef90_A0A3A9F2U0	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147021_54	eggNOG-mapper	1408823.AXUS01000024_gene2741	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0147021_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0147021_54	Pfam	PF05036	SPOR domain	SPOR
UHGV-0147021_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0147021_54	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0147021_56	Structural annotation	PF08005, PF19972	NA	NA
UHGV-0147021_58	PHROG	phrog_9829	NA	unknown function
UHGV-0147021_60	PHROG	phrog_10226	NA	unknown function
UHGV-0147021_60	eggNOG-mapper	1347369.CCAD010000077_gene2877	Restriction endonuclease	NA
UHGV-0147021_60	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0147021_60	Structural annotation	PF01878, COG4127	NA	NA