UHGV-0147049

Genome information

Genome length 39,117 bps

CDS count 53

Completeness 99.82% (high-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147049
vOTU ID	vOTU-011663
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_398603
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.82% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.07
Jumbo phage	No

Genome content
Genome length	39,117 bps
GC content	50.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.29%
Average CDS length	684.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147049_1	eggNOG-mapper	1120998.AUFC01000030_gene2248	NA	NA
UHGV-0147049_2	PHROG	phrog_22978	NA	unknown function
UHGV-0147049_2	UniRef90	UniRef90_A0A7X1I7W3	LPD3 domain-containing protein	NA
UHGV-0147049_2	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0147049_2	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0147049_2	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0147049_4	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0147049_4	UniRef90	UniRef90_A0A847CX66	NA	NA
UHGV-0147049_4	eggNOG-mapper	1408437.JNJN01000001_gene1713	NA	NA
UHGV-0147049_4	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0147049_5	Structural annotation	PF11650	NA	NA
UHGV-0147049_6	PHROG	phrog_156	portal protein	head and packaging
UHGV-0147049_6	UniRef90	UniRef90_A0A0C9LYG8	Head-to-tail joining protein	NA
UHGV-0147049_6	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0147049_6	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0147049_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0147049_7	UniRef90	UniRef90_A3DIA2	NA	NA
UHGV-0147049_7	eggNOG-mapper	1121335.Clst_0392	NA	NA
UHGV-0147049_7	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0147049_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0147049_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0147049_10	UniRef90	UniRef90_A0A3D1I1T2	PBSX family phage terminase large subunit	NA
UHGV-0147049_10	eggNOG-mapper	1408823.AXUS01000024_gene2712	Phage terminase, large subunit, PBSX family	NA
UHGV-0147049_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0147049_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0147049_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0147049_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0147049_10	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0147049_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0147049_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0147049_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0147049_11	UniRef90	UniRef90_UPI001667275A	terminase small subunit	NA
UHGV-0147049_11	eggNOG-mapper	1203606.HMPREF1526_00319	Terminase small subunit	NA
UHGV-0147049_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0147049_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0147049_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0147049_13	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0147049_13	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0147049_13	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0147049_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0147049_15	eggNOG-mapper	1410670.JHXF01000015_gene2276	NA	NA
UHGV-0147049_15	Pfam	PF07374	NA	DUF1492
UHGV-0147049_16	eggNOG-mapper	610130.Closa_0421	NA	NA
UHGV-0147049_18	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0147049_19	PHROG	phrog_924	NA	unknown function
UHGV-0147049_19	UniRef90	UniRef90_A0A1Y4L2U8	NA	NA
UHGV-0147049_19	eggNOG-mapper	1433287.X808_8690	NA	NA
UHGV-0147049_19	Pfam	PF04448	NA	DUF551
UHGV-0147049_19	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0147049_23	PHROG	phrog_25732	NA	unknown function
UHGV-0147049_23	UniRef90	UniRef90_UPI001C641777	Lar family restriction alleviation protein	NA
UHGV-0147049_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0147049_24	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0147049_24	UniRef90	UniRef90_A0A7I8D3P4	NA	NA
UHGV-0147049_24	eggNOG-mapper	1176423.I6S776_9VIRU	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0147049_24	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0147049_24	Structural annotation	PF18909	NA	NA
UHGV-0147049_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0147049_25	UniRef90	UniRef90_A0A098AU96	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes	NA
UHGV-0147049_25	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0147049_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0147049_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0147049_25	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0147049_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0147049_26	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0147049_26	UniRef90	UniRef90_A0A1C6D624	Cytosine-specific methyltransferase	NA
UHGV-0147049_26	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-0147049_26	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0147049_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0147049_26	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0147049_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0147049_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0147049_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0147049_27	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0147049_27	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0147049_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0147049_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0147049_28	PHROG	phrog_28936	NA	unknown function
UHGV-0147049_28	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0147049_28	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0147049_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0147049_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0147049_29	UniRef90	UniRef90_A0A357WVP9	Single-stranded DNA-binding protein	NA
UHGV-0147049_29	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-0147049_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0147049_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0147049_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0147049_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0147049_29	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0147049_30	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0147049_30	UniRef90	UniRef90_A0A3D4VRX2	NA	NA
UHGV-0147049_30	eggNOG-mapper	1094508.Tsac_2440	NA	NA
UHGV-0147049_30	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0147049_30	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0147049_31	PHROG	phrog_1389	NA	unknown function
UHGV-0147049_31	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0147049_31	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0147049_32	PHROG	phrog_7566	NA	unknown function
UHGV-0147049_32	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0147049_33	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0147049_33	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0147049_33	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0147049_33	Pfam	PF06378	NA	DUF1071
UHGV-0147049_33	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0147049_35	eggNOG-mapper	1033743.CAES01000078_gene3736	Flagellar Assembly Protein A	NA
UHGV-0147049_35	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA
UHGV-0147049_41	UniRef90	UniRef90_A0A1Y4J3I8	XRE family transcriptional regulator	NA
UHGV-0147049_41	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0147049_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0147049_42	UniRef90	UniRef90_A0A1C6FPL5	Helix-turn-helix domain	NA
UHGV-0147049_42	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0147049_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0147049_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0147049_42	Structural annotation	PF12844, MF_02017, NF041951, COG3655	NA	NA
UHGV-0147049_43	PHROG	phrog_20936	NA	unknown function
UHGV-0147049_45	PHROG	phrog_7395	NA	unknown function
UHGV-0147049_45	UniRef90	UniRef90_A0A5C6ZEU0	NA	NA
UHGV-0147049_45	eggNOG-mapper	768706.Desor_5447	NA	NA
UHGV-0147049_45	Pfam	PF14015	NA	DUF4231
UHGV-0147049_45	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0147049_45	Structural annotation	PF14015, NF033634	NA	NA
UHGV-0147049_46	PHROG	phrog_419	NA	unknown function
UHGV-0147049_46	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0147049_46	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0147049_47	PHROG	phrog_6988	NA	unknown function
UHGV-0147049_47	UniRef90	UniRef90_A0A135L1B2	Nuclease	NA
UHGV-0147049_47	eggNOG-mapper	203119.Cthe_2456	NA	NA
UHGV-0147049_47	PADLOC	ThsB1_00002	TIR-like	Thoeris
UHGV-0147049_47	Pfam	PF08937	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
UHGV-0147049_47	Structural annotation	PF08937, MF_03036, TIGR03646, COG0758	NA	NA
UHGV-0147049_48	KOfam	K14059	int; integrase	NA
UHGV-0147049_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0147049_48	UniRef90	UniRef90_UPI0005AA7FA8	site-specific integrase	NA
UHGV-0147049_48	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0147049_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147049_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0147049_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0147049_49	PHROG	phrog_33625	holin	lysis
UHGV-0147049_49	UniRef90	UniRef90_A0A1C6GBA6	Small integral membrane protein	NA
UHGV-0147049_49	eggNOG-mapper	428125.CLOLEP_01780	COG COG5546 Small integral membrane protein	NA
UHGV-0147049_49	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0147049_49	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0147049_49	COG	COG5546	NA	NA
UHGV-0147049_49	Structural annotation	COG5546	NA	NA
UHGV-0147049_50	PHROG	phrog_1009	NA	unknown function
UHGV-0147049_50	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0147049_51	PHROG	phrog_3393	endolysin	lysis
UHGV-0147049_51	eggNOG-mapper	1232452.BAIB02000007_gene1604	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0147049_51	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0147049_52	eggNOG-mapper	1121346.KB899820_gene2840	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0147049_52	COG	COG5301	Phage-related tail fiber protein	NA