UHGV-0147056

Genome information

Genome length 15,196 bps

CDS count 19

Completeness 68.47% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147056
vOTU ID	vOTU-027235
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_435213
BioSample	SAMN06016414
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.92
Jumbo phage	No

Genome content
Genome length	15,196 bps
GC content	40.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	95.36%
Average CDS length	764.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147056_1	PHROG	phrog_2150	terminase	head and packaging
UHGV-0147056_1	UniRef90	UniRef90_R5FXH7	DNA encapsidation ATPase	NA
UHGV-0147056_1	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0147056_1	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0147056_1	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0147056_2	Structural annotation	PF11418	NA	NA
UHGV-0147056_3	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0147056_3	UniRef90	UniRef90_R5FMN0	Major head protein	NA
UHGV-0147056_3	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0147056_3	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0147056_5	PHROG	phrog_2248	tail protein	tail
UHGV-0147056_5	UniRef90	UniRef90_R5FY06	Tail protein	NA
UHGV-0147056_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0147056_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0147056_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0147056_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0147056_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0147056_6	UniRef90	UniRef90_R5FZI8	Connector protein	NA
UHGV-0147056_6	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0147056_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0147056_6	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0147056_7	PHROG	phrog_5472	lower collar	tail
UHGV-0147056_7	UniRef90	UniRef90_R5FKQ7	Lower collar	NA
UHGV-0147056_8	UniRef90	UniRef90_R5FPP2	Minor tail protein	NA
UHGV-0147056_9	PHROG	phrog_1863	NA	unknown function
UHGV-0147056_10	PHROG	phrog_263	holin	lysis
UHGV-0147056_10	UniRef90	UniRef90_A0A1F8V0V3	Phage holin	NA
UHGV-0147056_10	eggNOG-mapper	1297617.JPJD01000099_gene2175	SPP1 phage holin	NA
UHGV-0147056_10	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0147056_10	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0147056_10	Structural annotation	PF04688	NA	NA
UHGV-0147056_11	PHROG	phrog_8781	endolysin	lysis
UHGV-0147056_11	UniRef90	UniRef90_R5FY02	CHAP domain./Lectin C-type domain	NA
UHGV-0147056_11	eggNOG-mapper	1410632.JHWW01000001_gene1344	NA	NA
UHGV-0147056_11	Pfam	PF05257	CHAP domain	CHAP
UHGV-0147056_11	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0147056_13	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0147056_13	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0147056_13	UniRef90	UniRef90_A0A417HQJ2	Modification methylase MunI	NA
UHGV-0147056_13	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0147056_13	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0147056_13	Pfam	PF05063	MT-A70	MT-A70
UHGV-0147056_13	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0147056_13	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0147056_15	UniRef90	UniRef90_R5FL72	Anthranilate synthase	NA
UHGV-0147056_17	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0147056_17	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0147056_17	UniRef90	UniRef90_R5FY00	DNA-directed DNA polymerase	NA
UHGV-0147056_17	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0147056_17	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0147056_17	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0147056_19	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0147056_19	Structural annotation	PF17427	NA	NA