UHGV-0147062

Genome information

Genome length 39,231 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9575

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147062
vOTU ID	vOTU-067039
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_399298
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9575
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.28
Jumbo phage	No

Genome content
Genome length	39,231 bps
GC content	37.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.71%
Average CDS length	746.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147062_1	PHROG	phrog_21376	NA	unknown function
UHGV-0147062_1	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0147062_1	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0147062_1	Pfam	PF20573	NA	DUF6782
UHGV-0147062_1	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0147062_1	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0147062_4	KOfam	K14059	int; integrase	NA
UHGV-0147062_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0147062_4	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0147062_4	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0147062_4	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0147062_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147062_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147062_4	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0147062_5	KOfam	K14059	int; integrase	NA
UHGV-0147062_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0147062_5	UniRef90	UniRef90_UPI000E4C7350	site-specific integrase	NA
UHGV-0147062_5	eggNOG-mapper	1469948.JPNB01000003_gene298	Belongs to the 'phage' integrase family	NA
UHGV-0147062_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0147062_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147062_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147062_5	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0147062_6	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0147062_7	PHROG	phrog_1914	NA	unknown function
UHGV-0147062_7	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0147062_7	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0147062_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0147062_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0147062_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0147062_8	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0147062_8	UniRef90	UniRef90_A0A374ND72	Transcriptional regulator	NA
UHGV-0147062_8	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0147062_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0147062_8	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0147062_9	UniRef90	UniRef90_A0A374N1V0	NA	NA
UHGV-0147062_9	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0147062_9	Pfam	PF05339	NA	DUF739
UHGV-0147062_9	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0147062_9	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0147062_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0147062_10	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0147062_15	PHROG	phrog_8470	NA	unknown function
UHGV-0147062_15	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0147062_15	eggNOG-mapper	397288.C806_03897	PcfJ-like protein	NA
UHGV-0147062_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0147062_15	Structural annotation	PF14284	NA	NA
UHGV-0147062_16	PHROG	phrog_15609	NA	unknown function
UHGV-0147062_16	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0147062_16	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0147062_16	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0147062_17	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0147062_17	PHROG	phrog_5696	NA	unknown function
UHGV-0147062_17	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0147062_17	eggNOG-mapper	742740.HMPREF9474_03119	N-6 DNA Methylase	NA
UHGV-0147062_17	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0147062_17	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0147062_17	Structural annotation	PF13679, MF_02126, TIGR00497, COG0286	NA	NA
UHGV-0147062_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0147062_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0147062_18	UniRef90	UniRef90_A0A3D0XCX4	Integrase	NA
UHGV-0147062_18	eggNOG-mapper	484018.BACPLE_03294	Belongs to the 'phage' integrase family	NA
UHGV-0147062_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147062_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147062_18	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0147062_20	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147062_20	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0147062_20	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0147062_20	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0147062_20	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0147062_21	PHROG	phrog_8684	NA	unknown function
UHGV-0147062_21	UniRef90	UniRef90_A0A412ULY6	YopX domain-containing protein	NA
UHGV-0147062_21	eggNOG-mapper	411473.RUMCAL_00283	YopX protein	NA
UHGV-0147062_21	Pfam	PF09643	YopX protein	YopX
UHGV-0147062_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0147062_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0147062_22	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0147062_23	PADLOC	cluster3	Csf1_0_IV	CRISPR-CAS
UHGV-0147062_25	PHROG	phrog_22746	NA	unknown function
UHGV-0147062_25	UniRef90	UniRef90_UPI0004070CEC	RAMP superfamily CRISPR-associated protein	NA
UHGV-0147062_25	eggNOG-mapper	107636.JQNK01000009_gene1999	crispr-associated protein	NA
UHGV-0147062_25	PADLOC	mkCas0183	CAS-IV-A; effector_G7	CRISPR-CAS
UHGV-0147062_25	Pfam	PF03787	RAMP superfamily	RAMPs
UHGV-0147062_25	COG	COG1857	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	NA
UHGV-0147062_25	Structural annotation	PF01905, TIGR03115, COG1604	NA	NA
UHGV-0147062_27	PHROG	phrog_27044	NA	unknown function
UHGV-0147062_27	UniRef90	UniRef90_A0A3C2EJC9	QueT transporter family protein	NA
UHGV-0147062_27	eggNOG-mapper	1410658.JHWI01000004_gene185	NA	NA
UHGV-0147062_27	Pfam	PF06177	QueT transporter	QueT
UHGV-0147062_27	COG	COG4708	ECF-type transporter of queuosine precursor, membrane (S) component	NA
UHGV-0147062_27	Structural annotation	PF06177, MF_01572, TIGR04522, COG4708	NA	NA
UHGV-0147062_28	PHROG	phrog_34599	NA	unknown function
UHGV-0147062_28	eggNOG-mapper	756272.Plabr_0248	NA	NA
UHGV-0147062_28	PADLOC	cluster2	Csf3_0_IV	CRISPR-CAS
UHGV-0147062_28	Structural annotation	PF09704, TIGR03116, COG1604	NA	NA
UHGV-0147062_29	PHROG	phrog_824	NA	unknown function
UHGV-0147062_29	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-0147062_29	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0147062_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0147062_29	Structural annotation	PF08774	NA	NA
UHGV-0147062_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0147062_31	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0147062_31	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0147062_32	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0147062_32	Structural annotation	TIGR01636	NA	NA
UHGV-0147062_34	PHROG	phrog_1066	NA	unknown function
UHGV-0147062_34	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0147062_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0147062_35	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0147062_35	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0147062_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0147062_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0147062_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147062_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0147062_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0147062_36	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0147062_36	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0147062_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0147062_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0147062_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0147062_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0147062_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0147062_37	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0147062_37	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0147062_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0147062_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0147062_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0147062_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0147062_38	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0147062_38	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0147062_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147062_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147062_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0147062_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147062_39	PHROG	phrog_5223	neck protein	connector
UHGV-0147062_39	UniRef90	UniRef90_UPI0019613678	head-tail connector protein	NA
UHGV-0147062_39	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0147062_39	Structural annotation	TIGR01560	NA	NA
UHGV-0147062_40	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0147062_40	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0147062_40	eggNOG-mapper	768704.Desmer_4460	head-tail adaptor	NA
UHGV-0147062_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0147062_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0147062_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0147062_41	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0147062_41	eggNOG-mapper	642492.Clole_0747	NA	NA
UHGV-0147062_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0147062_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0147062_41	Structural annotation	TIGR01725	NA	NA
UHGV-0147062_42	Structural annotation	PF12691	NA	NA
UHGV-0147062_43	PHROG	phrog_885	major tail protein	tail
UHGV-0147062_43	UniRef90	UniRef90_A0A3D3W9F4	CBM_X2 domain-containing protein	NA
UHGV-0147062_43	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0147062_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0147062_44	eggNOG-mapper	272562.CA_C0058	NA	NA
UHGV-0147062_46	PHROG	phrog_23464	NA	unknown function
UHGV-0147062_46	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0147062_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0147062_46	Structural annotation	COG3941	NA	NA
UHGV-0147062_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147062_47	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0147062_47	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0147062_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0147062_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0147062_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0147062_48	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0147062_48	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0147062_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0147062_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0147062_48	COG	COG4926	Phage-related protein	NA
UHGV-0147062_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0147062_49	Pfam	PF10651	BppU N-terminal domain	BppU_N