UHGV-0147087

Genome information

Genome length 17,611 bps

CDS count 25

Completeness 51.61% (medium-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147087
vOTU ID	vOTU-027236
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_395387
BioSample	SAMN04480490
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.75
Jumbo phage	No

Genome content
Genome length	17,611 bps
GC content	45.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	91.74%
Average CDS length	651.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147087_1	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-0147087_2	UniRef90	UniRef90_A0A8A0RJZ7	HicB-like domain-containing protein	NA
UHGV-0147087_2	eggNOG-mapper	1120973.AQXL01000111_gene959	HicB family	NA
UHGV-0147087_2	Pfam	PF05534	HicB family	HicB
UHGV-0147087_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0147087_3	eggNOG-mapper	635013.TherJR_0676	NA	NA
UHGV-0147087_3	Structural annotation	COG1724	NA	NA
UHGV-0147087_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0147087_4	PHROG	phrog_291	endolysin	lysis
UHGV-0147087_4	UniRef90	UniRef90_UPI00164453CD	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0147087_4	eggNOG-mapper	877411.JMMA01000002_gene2608	hydrolase, family 25	NA
UHGV-0147087_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0147087_4	Pfam	PF01476	LysM domain	LysM
UHGV-0147087_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0147087_4	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0147087_5	PHROG	phrog_199	holin	lysis
UHGV-0147087_5	UniRef90	UniRef90_A0A5R9MH90	Phage holin family protein	NA
UHGV-0147087_5	eggNOG-mapper	887325.HMPREF0381_0407	toxin secretion phage lysis holin	NA
UHGV-0147087_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0147087_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0147087_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0147087_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0147087_9	PHROG	phrog_6616	tail protein	tail
UHGV-0147087_9	eggNOG-mapper	1160721.RBI_II00526	NA	NA
UHGV-0147087_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0147087_10	PHROG	phrog_1194	NA	unknown function
UHGV-0147087_10	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0147087_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0147087_11	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0147087_11	eggNOG-mapper	768726.HMPREF9178_1054	phage tail tape measure protein	NA
UHGV-0147087_11	COG	COG1511	NA	NA
UHGV-0147087_11	Structural annotation	PF16535	NA	NA
UHGV-0147087_12	PHROG	phrog_1633	NA	unknown function
UHGV-0147087_12	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0147087_12	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0147087_12	Pfam	PF17318	NA	DUF5361
UHGV-0147087_12	Structural annotation	PF17318	NA	NA
UHGV-0147087_13	PHROG	phrog_1526	NA	unknown function
UHGV-0147087_13	UniRef90	UniRef90_G2SN49	NA	NA
UHGV-0147087_13	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0147087_14	PHROG	phrog_117	major tail protein	tail
UHGV-0147087_14	UniRef90	UniRef90_A0A373V4D0	Phage tail protein	NA
UHGV-0147087_14	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0147087_14	COG	COG5492	NA	NA
UHGV-0147087_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0147087_15	PHROG	phrog_123	tail terminator	connector
UHGV-0147087_15	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-0147087_15	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-0147087_15	Structural annotation	PF06141	NA	NA
UHGV-0147087_16	PHROG	phrog_387	neck protein	connector
UHGV-0147087_16	eggNOG-mapper	1423775.BAMN01000011_gene600	NA	NA
UHGV-0147087_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0147087_17	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0147087_17	eggNOG-mapper	43685.Q38120_BPR1T	NA	NA
UHGV-0147087_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0147087_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0147087_18	UniRef90	UniRef90_R6C7E8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0147087_18	eggNOG-mapper	873448.STRPO_0287	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0147087_18	Pfam	PF09355	NA	Phage_Gp19
UHGV-0147087_18	Structural annotation	PF09355	NA	NA
UHGV-0147087_19	PHROG	phrog_32396	NA	unknown function
UHGV-0147087_19	UniRef90	UniRef90_A0A373V3S9	Phage major capsid protein	NA
UHGV-0147087_19	eggNOG-mapper	936375.HMPREF1152_0679	Phage capsid family	NA
UHGV-0147087_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147087_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147087_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147087_20	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0147087_20	UniRef90	UniRef90_A0A3E3DV05	NA	NA
UHGV-0147087_20	eggNOG-mapper	1280698.AUJS01000007_gene1037	NA	NA
UHGV-0147087_20	Pfam	PF14265	NA	DUF4355
UHGV-0147087_20	Structural annotation	PF14265	NA	NA
UHGV-0147087_21	PHROG	phrog_17688	NA	unknown function
UHGV-0147087_21	UniRef90	UniRef90_A0A373V412	Terminase	NA
UHGV-0147087_21	eggNOG-mapper	665950.HMPREF1025_02532	phage terminase, large subunit	NA
UHGV-0147087_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147087_21	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0147087_23	eggNOG-mapper	936596.HMPREF1495_2378	NA	NA
UHGV-0147087_24	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0147087_24	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0147087_24	eggNOG-mapper	1214184.ALKY01000039_gene923	NA	NA
UHGV-0147087_25	PHROG	phrog_104	portal protein	head and packaging
UHGV-0147087_25	UniRef90	UniRef90_A0A373V3S0	Phage portal protein	NA
UHGV-0147087_25	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0147087_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA