UHGV-0147214

Genome information

Genome length 22,311 bps

CDS count 40

Completeness 52.50% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147214
vOTU ID	vOTU-021845
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_438069
BioSample	SAMN06016340
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.41
Jumbo phage	No

Genome content
Genome length	22,311 bps
GC content	52.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	86.14%
Average CDS length	484.65 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147214_1	KOfam	K14059	int; integrase	NA
UHGV-0147214_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0147214_1	UniRef90	UniRef90_UPI001EDE32BF	site-specific integrase	NA
UHGV-0147214_1	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0147214_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147214_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147214_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0147214_2	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0147214_2	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0147214_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147214_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0147214_2	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0147214_3	UniRef90	UniRef90_T3DAN7	Heavy-metal-binding family protein	NA
UHGV-0147214_3	eggNOG-mapper	1151292.QEW_2544	Putative heavy-metal-binding	NA
UHGV-0147214_3	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0147214_3	COG	COG0393	NA	NA
UHGV-0147214_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0147214_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0147214_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0147214_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0147214_6	UniRef90	UniRef90_N9Z4Q7	HTH cro/C1-type domain-containing protein	NA
UHGV-0147214_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147214_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0147214_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0147214_7	PHROG	phrog_15946	NA	unknown function
UHGV-0147214_7	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0147214_11	PHROG	phrog_22529	NA	unknown function
UHGV-0147214_11	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0147214_11	eggNOG-mapper	1304866.K413DRAFT_1950	3D domain protein	NA
UHGV-0147214_11	Pfam	PF06725	3D domain	3D
UHGV-0147214_11	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0147214_11	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0147214_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147214_13	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0147214_13	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0147214_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0147214_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0147214_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0147214_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0147214_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0147214_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0147214_14	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0147214_14	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0147214_14	Pfam	PF03837	RecT family	RecT
UHGV-0147214_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0147214_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0147214_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0147214_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0147214_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0147214_15	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0147214_15	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0147214_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0147214_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0147214_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0147214_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0147214_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0147214_16	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0147214_16	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0147214_16	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0147214_16	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0147214_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0147214_16	Structural annotation	PF14297	NA	NA
UHGV-0147214_17	PHROG	phrog_9804	NA	unknown function
UHGV-0147214_17	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0147214_17	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0147214_17	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0147214_17	Structural annotation	PF11417	NA	NA
UHGV-0147214_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0147214_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0147214_18	UniRef90	UniRef90_A0A7M2RKZ5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0147214_18	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0147214_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0147214_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0147214_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0147214_19	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0147214_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0147214_19	UniRef90	UniRef90_A0A7X6YBU5	Helix-turn-helix transcriptional regulator	NA
UHGV-0147214_19	eggNOG-mapper	555079.Toce_0059	transcriptional regulator, XRE family	NA
UHGV-0147214_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0147214_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0147214_19	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-0147214_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147214_20	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0147214_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147214_21	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0147214_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0147214_22	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0147214_22	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0147214_22	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0147214_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0147214_22	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0147214_23	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0147214_23	UniRef90	UniRef90_UPI000F065B6D	adenine methyltransferase	NA
UHGV-0147214_23	eggNOG-mapper	1450694.BTS2_0497	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0147214_23	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0147214_23	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0147214_23	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0147214_24	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0147214_24	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0147214_25	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0147214_26	PHROG	phrog_38832	NA	unknown function
UHGV-0147214_26	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0147214_27	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147214_27	UniRef90	UniRef90_UPI0013002188	helix-turn-helix transcriptional regulator	NA
UHGV-0147214_27	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0147214_27	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0147214_28	PHROG	phrog_3136	NA	unknown function
UHGV-0147214_28	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0147214_28	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0147214_28	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0147214_28	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0147214_34	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0147214_34	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0147214_34	Structural annotation	PF02001, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0147214_35	UniRef90	UniRef90_UPI00164C5C54	helix-turn-helix domain containing protein	NA
UHGV-0147214_35	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0147214_36	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0147214_36	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0147214_36	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0147214_36	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0147214_36	Structural annotation	PF16677	NA	NA
UHGV-0147214_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0147214_37	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0147214_37	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0147214_37	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0147214_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0147214_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0147214_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0147214_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0147214_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0147214_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0147214_38	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0147214_38	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0147214_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0147214_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0147214_39	KOfam	K12063	traC; conjugal transfer ATP-binding protein TraC	NA
UHGV-0147214_39	UniRef90	UniRef90_A0A3D1X3F1	Type VI secretion protein (Fragment)	NA
UHGV-0147214_39	eggNOG-mapper	1378168.N510_03011	type IV secretory pathway VirB4	NA
UHGV-0147214_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0147214_39	COG	COG3451	Type IV secretory pathway, VirB4 component	NA
UHGV-0147214_40	eggNOG-mapper	693746.OBV_44670	Peptidase family M23	NA
UHGV-0147214_40	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA