UHGV-0147232

Genome information

Genome length 38,366 bps

CDS count 59

Completeness 71.67% (medium-quality)

geNomad score 0.9676

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147232
vOTU ID	vOTU-027240
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_396302
BioSample	SAMN04161028
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9676
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.83
Jumbo phage	No

Genome content
Genome length	38,366 bps
GC content	29.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.08%
Average CDS length	580.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147232_1	KOfam	K14059	int; integrase	NA
UHGV-0147232_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0147232_1	UniRef90	UniRef90_UPI0002CC9C99	site-specific integrase	NA
UHGV-0147232_1	eggNOG-mapper	1345695.CLSA_c23150	Belongs to the 'phage' integrase family	NA
UHGV-0147232_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0147232_1	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0147232_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147232_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147232_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0147232_2	PHROG	phrog_1847	NA	unknown function
UHGV-0147232_2	UniRef90	UniRef90_A0A7U9D8Y1	T5orf172 domain-containing protein	NA
UHGV-0147232_2	eggNOG-mapper	608534.GCWU000341_02322	T5orf172	NA
UHGV-0147232_2	Pfam	PF13250	NA	DUF4041
UHGV-0147232_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0147232_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0147232_2	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0147232_3	PHROG	phrog_87	metallo-protease	other
UHGV-0147232_3	UniRef90	UniRef90_A0A8E1RC22	Peptidase_M78 domain-containing protein	NA
UHGV-0147232_3	eggNOG-mapper	445335.CBN_3016	IrrE N-terminal-like domain	NA
UHGV-0147232_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0147232_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0147232_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0147232_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0147232_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0147232_4	UniRef90	UniRef90_A0A8E1RE10	XRE family transcriptional regulator	NA
UHGV-0147232_4	eggNOG-mapper	445335.CBN_3015	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0147232_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0147232_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147232_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0147232_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0147232_5	UniRef90	UniRef90_A0A6L9ENN8	Helix-turn-helix domain-containing protein	NA
UHGV-0147232_5	eggNOG-mapper	931276.Cspa_c07470	Helix-turn-helix XRE-family like proteins	NA
UHGV-0147232_5	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0147232_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0147232_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0147232_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0147232_6	UniRef90	UniRef90_UPI0002C95DD6	phage antirepressor KilAC domain-containing protein	NA
UHGV-0147232_6	eggNOG-mapper	536232.CLM_2573	Phage antirepressor protein	NA
UHGV-0147232_6	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0147232_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0147232_6	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0147232_6	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0147232_7	UniRef90	UniRef90_A0A8E1RGA9	Transcription factor	NA
UHGV-0147232_7	eggNOG-mapper	1415774.U728_874	NA	NA
UHGV-0147232_7	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0147232_8	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0147232_8	UniRef90	UniRef90_A0A8E1REF6	Histidine kinase	NA
UHGV-0147232_8	eggNOG-mapper	1415775.U729_2581	NA	NA
UHGV-0147232_8	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0147232_9	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0147232_9	UniRef90	UniRef90_UPI0011782A38	transcription factor	NA
UHGV-0147232_9	eggNOG-mapper	632245.CLP_2643	NA	NA
UHGV-0147232_9	Structural annotation	PF21531, NF033787, COG3311	NA	NA
UHGV-0147232_13	UniRef90	UniRef90_UPI001C0D8FB5	phage tail tube protein	NA
UHGV-0147232_14	eggNOG-mapper	536233.CLO_1532	NA	NA
UHGV-0147232_15	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0147232_15	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0147232_15	UniRef90	UniRef90_A0A0F4VR55	SpoVT-AbrB domain-containing protein	NA
UHGV-0147232_15	eggNOG-mapper	1294142.CINTURNW_3729	AbrB family	NA
UHGV-0147232_15	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0147232_15	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0147232_15	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0147232_15	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0147232_16	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0147232_16	eggNOG-mapper	1391647.AVSV01000003_gene1785	NA	NA
UHGV-0147232_17	PHROG	phrog_7199	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0147232_17	eggNOG-mapper	931276.Cspa_c26600	NA	NA
UHGV-0147232_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0147232_19	UniRef90	UniRef90_A0A0F4VQR1	Essential recombination function protein	NA
UHGV-0147232_19	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0147232_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0147232_19	Structural annotation	PF04404	NA	NA
UHGV-0147232_20	PHROG	phrog_674	NA	unknown function
UHGV-0147232_20	UniRef90	UniRef90_UPI0018AB6204	NA	NA
UHGV-0147232_20	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-0147232_20	Pfam	PF07083	NA	DUF1351
UHGV-0147232_20	Structural annotation	PF07083	NA	NA
UHGV-0147232_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0147232_21	UniRef90	UniRef90_A0A0F4VRR6	DnaA_N domain-containing protein	NA
UHGV-0147232_21	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-0147232_21	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0147232_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0147232_21	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0147232_23	PHROG	phrog_3497	NA	unknown function
UHGV-0147232_23	UniRef90	UniRef90_A0A512TRX3	HNH endonuclease	NA
UHGV-0147232_23	eggNOG-mapper	1280689.AUJC01000003_gene939	NA	NA
UHGV-0147232_23	Structural annotation	COG5126	NA	NA
UHGV-0147232_24	PHROG	phrog_1389	NA	unknown function
UHGV-0147232_24	eggNOG-mapper	1280692.AUJL01000025_gene2094	NA	NA
UHGV-0147232_24	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0147232_26	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0147232_26	UniRef90	UniRef90_UPI001B380BAD	replication terminator protein	NA
UHGV-0147232_26	eggNOG-mapper	536232.CLM_2556	replication terminator protein, phage associated	NA
UHGV-0147232_27	PHROG	phrog_1029	NA	unknown function
UHGV-0147232_27	eggNOG-mapper	1294142.CINTURNW_1017	NA	NA
UHGV-0147232_27	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0147232_28	KOfam	K03700	recU; recombination protein U	NA
UHGV-0147232_28	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0147232_28	UniRef90	UniRef90_A0A0F4VTJ0	Holliday junction resolvase RecU	NA
UHGV-0147232_28	eggNOG-mapper	1415774.U728_846	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0147232_28	Pfam	PF03838	Recombination protein U	RecU
UHGV-0147232_28	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0147232_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0147232_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0147232_29	UniRef90	UniRef90_A0A512TR35	Single-stranded DNA-binding protein	NA
UHGV-0147232_29	eggNOG-mapper	632245.CLP_4116	Single-stranded DNA-binding protein	NA
UHGV-0147232_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0147232_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0147232_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0147232_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0147232_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0147232_30	PHROG	phrog_28936	NA	unknown function
UHGV-0147232_30	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0147232_30	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0147232_31	PHROG	phrog_15215	NA	unknown function
UHGV-0147232_31	eggNOG-mapper	632245.CLP_2713	NA	NA
UHGV-0147232_31	Structural annotation	PF17516, MF_01549, NF000331, COG5475	NA	NA
UHGV-0147232_32	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0147232_32	PHROG	phrog_17577	restriction endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147232_32	UniRef90	UniRef90_A0A0F4VQX8	NA	NA
UHGV-0147232_32	eggNOG-mapper	1196322.A370_02472	Restriction endonuclease	NA
UHGV-0147232_32	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0147232_32	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-0147232_33	UniRef90	UniRef90_UPI0018AA8F3E	RES family NAD+ phosphorylase	NA
UHGV-0147232_33	Pfam	PF08808	RES domain	RES
UHGV-0147232_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0147232_35	UniRef90	UniRef90_A0A0F4VQQ7	Chromosome partition protein smc	NA
UHGV-0147232_35	eggNOG-mapper	290402.Cbei_1629	NA	NA
UHGV-0147232_35	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0147232_36	PHROG	phrog_7854	endolysin	lysis
UHGV-0147232_36	UniRef90	UniRef90_A0A126JJ64	Glucan-binding repeat containing, putative cell wall binding protein	NA
UHGV-0147232_36	eggNOG-mapper	632245.CLP_2224	Putative cell wall binding repeat	NA
UHGV-0147232_36	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0147232_37	eggNOG-mapper	931276.Cspa_c22150	NA	NA
UHGV-0147232_38	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0147232_38	UniRef90	UniRef90_A0A7U9H2J4	HTH cro/C1-type domain-containing protein	NA
UHGV-0147232_38	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0147232_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147232_38	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0147232_40	eggNOG-mapper	632245.CLP_1639	NA	NA
UHGV-0147232_41	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0147232_41	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0147232_41	UniRef90	UniRef90_A0A0F4VQP4	Phage terminase small subunit	NA
UHGV-0147232_41	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0147232_41	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0147232_41	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0147232_41	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0147232_41	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0147232_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0147232_42	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0147232_42	UniRef90	UniRef90_A0A846K0S0	PBSX family phage terminase large subunit	NA
UHGV-0147232_42	eggNOG-mapper	1211817.CCAT010000049_gene2491	Phage terminase, large subunit, PBSX family	NA
UHGV-0147232_42	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0147232_42	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0147232_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0147232_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0147232_42	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0147232_43	PHROG	phrog_64	portal protein	head and packaging
UHGV-0147232_43	UniRef90	UniRef90_A0A6B4YEH3	Phage portal protein	NA
UHGV-0147232_43	eggNOG-mapper	1415774.U728_836	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0147232_43	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0147232_43	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0147232_44	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0147232_44	UniRef90	UniRef90_UPI000B205C59	exonuclease SbcC	NA
UHGV-0147232_44	eggNOG-mapper	536232.CLM_2527	NA	NA
UHGV-0147232_44	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0147232_46	PHROG	phrog_1315	NA	unknown function
UHGV-0147232_46	Structural annotation	TIGR00310	NA	NA
UHGV-0147232_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0147232_47	UniRef90	UniRef90_UPI0002C8CD2A	phage scaffolding protein	NA
UHGV-0147232_47	eggNOG-mapper	536232.CLM_2525	Phage minor structural protein GP20	NA
UHGV-0147232_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0147232_47	Structural annotation	PF06810	NA	NA
UHGV-0147232_48	PHROG	phrog_909	major head protein	head and packaging
UHGV-0147232_48	eggNOG-mapper	536233.CLO_1842	NA	NA
UHGV-0147232_49	PHROG	phrog_29	major head protein	head and packaging
UHGV-0147232_49	UniRef90	UniRef90_UPI0002C915EC	major capsid protein	NA
UHGV-0147232_49	eggNOG-mapper	431943.CKL_3270	Phage major capsid protein E	NA
UHGV-0147232_49	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0147232_49	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0147232_51	PHROG	phrog_4020	NA	unknown function
UHGV-0147232_51	eggNOG-mapper	1415774.U728_826	NA	NA
UHGV-0147232_52	PHROG	phrog_2405	NA	unknown function
UHGV-0147232_52	eggNOG-mapper	1211817.CCAT010000049_gene2500	NA	NA
UHGV-0147232_52	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0147232_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0147232_53	UniRef90	UniRef90_A0A2H4J736	Putative tail component protein	NA
UHGV-0147232_53	eggNOG-mapper	1415774.U728_824	Phage virion morphogenesis	NA
UHGV-0147232_53	COG	COG5005	NA	NA
UHGV-0147232_53	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0147232_54	PHROG	phrog_2146	NA	unknown function
UHGV-0147232_54	eggNOG-mapper	1415774.U728_823	NA	NA
UHGV-0147232_54	Structural annotation	PF20765, PF11367, COG5003	NA	NA
UHGV-0147232_55	PHROG	phrog_1939	NA	unknown function
UHGV-0147232_55	eggNOG-mapper	1204534.J9QEB6_9CAUD	NA	NA
UHGV-0147232_56	PHROG	phrog_279	tail sheath	tail
UHGV-0147232_56	UniRef90	UniRef90_A0A0F4VTJ4	Phage-like element PBSX protein xkdK	NA
UHGV-0147232_56	eggNOG-mapper	290402.Cbei_1647	Phage tail sheath protein beta-sandwich domain	NA
UHGV-0147232_56	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0147232_56	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0147232_56	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0147232_56	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0147232_57	PHROG	phrog_365	tail protein	tail
UHGV-0147232_57	UniRef90	UniRef90_A0A0F4VR72	Phage-like element PBSX protein xkdM	NA
UHGV-0147232_57	eggNOG-mapper	1211817.CCAT010000049_gene2505	Phage tail tube protein	NA
UHGV-0147232_57	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0147232_57	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0147232_58	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0147232_58	UniRef90	UniRef90_U5MUQ9	Phage XkdN-like protein	NA
UHGV-0147232_58	eggNOG-mapper	1415774.U728_819	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0147232_58	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0147232_58	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0147232_59	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0147232_59	UniRef90	UniRef90_UPI001F4C21A0	phage tail tape measure protein	NA
UHGV-0147232_59	eggNOG-mapper	290402.Cbei_1650	phage tail tape measure protein	NA
UHGV-0147232_59	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0147232_59	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0147232_59	COG	COG5283	Phage-related tail protein	NA