UHGV-0147601

Genome information

Genome length 23,706 bps

CDS count 32

Completeness 69.07% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0147601
vOTU ID	vOTU-021862
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_405363
BioSample	NA
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.32
Jumbo phage	No

Genome content
Genome length	23,706 bps
GC content	38.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.01%
Average CDS length	683.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0147601_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0147601_1	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0147601_1	UniRef90	UniRef90_UPI000C8394C0	helix-turn-helix domain-containing protein	NA
UHGV-0147601_1	eggNOG-mapper	1123311.KB904533_gene2085	sequence-specific DNA binding	NA
UHGV-0147601_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0147601_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0147601_1	Structural annotation	PF01381, NF041677, COG1396	NA	NA
UHGV-0147601_2	KOfam	K14059	int; integrase	NA
UHGV-0147601_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0147601_2	UniRef90	UniRef90_UPI00041838CC	site-specific integrase	NA
UHGV-0147601_2	eggNOG-mapper	1123263.AUKY01000012_gene1957	Pfam:Integrase_AP2	NA
UHGV-0147601_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0147601_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0147601_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0147601_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0147601_3	PHROG	phrog_33625	holin	lysis
UHGV-0147601_3	UniRef90	UniRef90_UPI00137381C3	phage holin	NA
UHGV-0147601_3	eggNOG-mapper	1385512.N784_12970	Bacteriophage holin	NA
UHGV-0147601_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0147601_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0147601_3	COG	COG5546	NA	NA
UHGV-0147601_3	Structural annotation	COG5546	NA	NA
UHGV-0147601_4	eggNOG-mapper	445971.ANASTE_00732	NA	NA
UHGV-0147601_5	KOfam	K07273	acm; lysozyme	NA
UHGV-0147601_5	PHROG	phrog_291	endolysin	lysis
UHGV-0147601_5	UniRef90	UniRef90_UPI001D017004	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0147601_5	eggNOG-mapper	1235798.C817_00299	family 25	NA
UHGV-0147601_5	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0147601_5	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0147601_5	Pfam	PF01476	LysM domain	LysM
UHGV-0147601_5	COG	COG1388	LysM repeat	NA
UHGV-0147601_5	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0147601_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0147601_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0147601_7	Structural annotation	PF10618	NA	NA
UHGV-0147601_8	PHROG	phrog_372	tail protein	tail
UHGV-0147601_8	UniRef90	UniRef90_UPI0011DE390F	NA	NA
UHGV-0147601_8	eggNOG-mapper	764299.STRIC_1425	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0147601_8	Pfam	PF05895	NA	DUF859
UHGV-0147601_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0147601_8	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0147601_9	PHROG	phrog_19556	tail fiber protein; host specificity	tail
UHGV-0147601_9	UniRef90	UniRef90_A0A374AEU0	Collagen-like protein	NA
UHGV-0147601_9	eggNOG-mapper	428127.EUBDOL_01565	cellulase activity	NA
UHGV-0147601_9	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0147601_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0147601_9	Structural annotation	PF03921, PF03426, NF041425, NF033675	NA	NA
UHGV-0147601_10	PHROG	phrog_38044	NA	unknown function
UHGV-0147601_10	UniRef90	UniRef90_I7ARM6	NA	NA
UHGV-0147601_10	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0147601_10	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0147601_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0147601_11	UniRef90	UniRef90_A0A890GYC9	Phage tail protein	NA
UHGV-0147601_11	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0147601_11	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0147601_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0147601_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0147601_11	COG	COG4926	Phage-related protein	NA
UHGV-0147601_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0147601_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0147601_12	UniRef90	UniRef90_A0A2X2UUQ3	Phage putative tail component	NA
UHGV-0147601_12	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0147601_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0147601_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0147601_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0147601_13	UniRef90	UniRef90_A0A1C6EH41	Phage-related protein	NA
UHGV-0147601_13	eggNOG-mapper	12390.Q77MU4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0147601_13	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0147601_14	PHROG	phrog_1633	NA	unknown function
UHGV-0147601_14	UniRef90	UniRef90_UPI001389891D	NA	NA
UHGV-0147601_14	eggNOG-mapper	883110.HMPREF9260_00651	NA	NA
UHGV-0147601_14	Structural annotation	PF17318	NA	NA
UHGV-0147601_15	PHROG	phrog_1526	NA	unknown function
UHGV-0147601_16	PHROG	phrog_117	major tail protein	tail
UHGV-0147601_16	UniRef90	UniRef90_A0A3E5D5Z0	Phage tail protein	NA
UHGV-0147601_16	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0147601_16	COG	COG5492	NA	NA
UHGV-0147601_16	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0147601_17	PHROG	phrog_123	tail terminator	connector
UHGV-0147601_17	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-0147601_17	eggNOG-mapper	875454.BAEW01000017_gene1591	NA	NA
UHGV-0147601_17	Structural annotation	PF06141	NA	NA
UHGV-0147601_18	PHROG	phrog_387	neck protein	connector
UHGV-0147601_18	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-0147601_18	eggNOG-mapper	1289597.M1PKU8_9CAUD	NA	NA
UHGV-0147601_19	PHROG	phrog_501	head closure Hc1	connector
UHGV-0147601_19	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0147601_19	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0147601_19	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0147601_20	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0147601_20	UniRef90	UniRef90_UPI000C83D02F	phage Gp19/Gp15/Gp42 family protein	NA
UHGV-0147601_20	eggNOG-mapper	706433.HMPREF9430_01264	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0147601_20	Pfam	PF09355	NA	Phage_Gp19
UHGV-0147601_20	Structural annotation	PF09355	NA	NA
UHGV-0147601_22	PHROG	phrog_32396	NA	unknown function
UHGV-0147601_22	UniRef90	UniRef90_A0A7X2NQN8	Phage major capsid protein	NA
UHGV-0147601_22	eggNOG-mapper	706433.HMPREF9430_01265	Phage capsid family	NA
UHGV-0147601_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0147601_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0147601_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0147601_23	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0147601_23	UniRef90	UniRef90_A0A890GYE3	NA	NA
UHGV-0147601_23	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0147601_23	Pfam	PF14265	NA	DUF4355
UHGV-0147601_23	Structural annotation	PF14265	NA	NA
UHGV-0147601_24	PHROG	phrog_17688	NA	unknown function
UHGV-0147601_24	UniRef90	UniRef90_E7MNZ6	Putative phage terminase, large subunit	NA
UHGV-0147601_24	eggNOG-mapper	706433.HMPREF9430_01267	phage terminase, large subunit	NA
UHGV-0147601_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0147601_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0147601_26	PHROG	phrog_3675	NA	unknown function
UHGV-0147601_26	UniRef90	UniRef90_UPI001C385ABB	YjcQ family protein	NA
UHGV-0147601_26	eggNOG-mapper	1111134.HMPREF1253_1941	YjcQ protein	NA
UHGV-0147601_26	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0147601_26	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0147601_27	UniRef90	UniRef90_R6QRM6	Minor capsid protein	NA
UHGV-0147601_27	eggNOG-mapper	1121335.Clst_0388	NA	NA
UHGV-0147601_28	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0147601_28	eggNOG-mapper	1321784.HMPREF1987_01068	cell adhesion	NA
UHGV-0147601_28	COG	COG2369	NA	NA
UHGV-0147601_28	Structural annotation	PF14076	NA	NA
UHGV-0147601_29	PHROG	phrog_104	portal protein	head and packaging
UHGV-0147601_29	UniRef90	UniRef90_A0A890GW77	Phage portal protein	NA
UHGV-0147601_29	eggNOG-mapper	706433.HMPREF9430_01270	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0147601_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0147601_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0147601_30	UniRef90	UniRef90_E7MP00	HNH endonuclease domain protein	NA
UHGV-0147601_30	eggNOG-mapper	706433.HMPREF9430_01271	HNH endonuclease domain protein	NA
UHGV-0147601_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0147601_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0147601_30	Structural annotation	PF01844	NA	NA
UHGV-0147601_31	eggNOG-mapper	1232446.BAIE02000003_gene848	NA	NA
UHGV-0147601_31	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0147601_31	Structural annotation	PF09274, COG4710	NA	NA